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[183718_at]

Description Y41C4A.2 /REP_DB=WormBase Gene ID /WP=CE20242 /TR=Q9U2I8 /GB=CAB63353.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 31      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 221.6
(3)
A 		70.1
(-1.7)
A 		29.9
(-3)
A 		98.3
(-0.9)
A 		192
B 214.4
(3)
P 		96.6
(-1.7)
A 		63.1
(-3)
A 		192.2
(2.1)
A 		151
C 314.7
(3)
A 		39.3
(-3)
A 		58.7
(-2.6)
A 		177.5
(0)
A 		275
avr 250.2
(3) 		68.7
(-2.5) 		50.6
(-3) 		156
(0.2) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 194.3
(3)
A 		164.1
(1.7)
A 		59.4
(-3)
A 		75
(-2.3)
A 		79.4
(-2.1)
A 		63.3
(-2.8)
A 		135
B 219.7
(3)
A 		163.8
(1)
A 		125.5
(-0.3)
A 		119.4
(-0.5)
A 		62.3
(-2.5)
A 		48.5
(-3)
A 		171
C 242.6
(3)
P 		134.4
(-0.9)
A 		130.4
(-1.1)
A 		86.9
(-2.7)
A 		102
(-2.1)
A 		77.8
(-3)
A 		165
avr 218.9
(3) 		154.1
(0.5) 		105.1
(-1.4) 		93.8
(-1.8) 		81.2
(-2.3) 		63.2
(-3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 80.7
(3)
A 		15.2
(-2.4)
A 		7.8
(-3)
A 		14.4
(-2.5)
A 		73
B 68.4
(3)
P 		23.8
(-2)
A 		14.6
(-3)
A 		41
(-0.1)
A 		54
C 104.2
(3)
A 		11.3
(-3)
A 		20.5
(-2.4)
A 		29.9
(-1.8)
A 		93
avr 84.4
(3) 		16.8
(-2.8) 		14.3
(-3) 		28.4
(-1.8) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 35.8
(0)
A 		58.3
(3)
A 		12.9
(-3)
A 		19
(-2.2)
A 		24
(-1.5)
A 		15.4
(-2.7)
A 		45
B 76.5
(3)
A 		54.5
(0.7)
A 		30.5
(-1.7)
A 		31.6
(-1.6)
A 		25.3
(-2.3)
A 		18.1
(-3)
A 		58
C 89.9
(3)
P 		41
(-1.1)
A 		33.2
(-1.7)
A 		17.5
(-3)
A 		33
(-1.7)
A 		26
(-2.3)
A 		72
avr 67.4
(3) 		51.3
(1) 		25.5
(-2.3) 		22.7
(-2.6) 		27.4
(-2) 		19.8
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183718_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7137
Sequence Type Exemplar sequence
Representative Public ID Y41C4A.2 NCBI
Target Description Y41C4A.2 /REP_DB=WormBase Gene ID /WP=CE20242 /TR=Q9U2I8 /GB=CAB63353.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067107(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067107 NCBI Caenorhabditis elegans Y41C4A.2 (Y41C4A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000034906 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11650113:11662866:1 11/11 None
Y41C4A.2 ENSEMBL cdna:known chromosome:CEL140:III:11650347:11656061:1 gene:Y41C4A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034876 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11650108-11655975(+) 94.68 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41C4A.2
Entrez Gene 176596 Entrez gene
SwissProt Q9U2I8 EMBL-EBI
WormBase CE31834 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4040 amidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63353 Hypothetical protein Y41C4A.2 [Caenorhabditis elegans] ref|NP_499508.2| Y41C4A.2 [Caenorhabditis elegans] 0.0
blast CAE67682 Hypothetical protein CBG13246 [Caenorhabditis briggsae] 1.0E-165
blast CAE67682 Hypothetical protein CBG13246 [Caenorhabditis briggsae] 1.0E-162
blast CAE67735 Hypothetical protein CBG13310 [Caenorhabditis briggsae] 2.0E-94
blast CAE67735 Hypothetical protein CBG13310 [Caenorhabditis briggsae] 6.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR000120 EMBL-EBI Amidase 6.9E-11
Pfam IPR000120 EMBL-EBI Amidase 6.5E-7
Pfam IPR000120 EMBL-EBI Amidase 6.9E-11
Pfam IPR000120 EMBL-EBI Amidase 6.5E-7
Sequence
Target Sequence 
>C. ELEGANS:183718_AT
agatggaagacattttcccgccgttccaagttgcacagatgtttttcaagacccaacggc
cagtcgactcgaattttattccaaatctctataaatcaaactcacaatgcctcgggagat
tcggcaaatttttaaattttcccaaacttgtcgctagaatttctaaacgagcagcggtga
tttcacagagctcgaatatgaaagaaatgtgcaaaaatctagaggatattgagagttata
agttgaagttcatcgagtactggaagagccttggcgttgatgtgttgatatgtcctgcgt
tttgtatacccgctgttcctgaaaaatatctacccgaactcgtgaacacccgcctatcca
ccggcctattcaatatgctggattttccggctggcatcgtgccagccggccatgtgacgg
cagatgacgtggcaaatttggaagatgagaagatttttccgattgacgatgcccttctcc
gaaagcagcgtgacgcatgtgtcaactcagaagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGGAAGACATTTTCCCGCCGTT 158 69 1094 Antisense
CGCCGTTCCAAGTTGCACAGATGTT 261 257 1112 Antisense
TAAATTTTCCCAAACTTGTCGCTAG 289 641 1226 Antisense
AGAGCCTTGGCGTTGATGTGTTGAT 200 69 1358 Antisense
ATGTCCTGCGTTTTGTATACCCGCT 99 49 1383 Antisense
TGTATACCCGCTGTTCCTGAAAAAT 13 561 1396 Antisense
TATCTACCCGAACTCGTGAACACCC 535 657 1420 Antisense
TCCACCGGCCTATTCAATATGCTGG 484 587 1450 Antisense
CCAGCCGGCCATGTGACGGCAGATG 590 273 1495 Antisense
CTTCTCCGAAAGCAGCGTGACGCAT 86 219 1567 Antisense
GACGCATGTGTCAACTCAGAAGCCA 145 381 1585 Antisense
Sequence Source Affymetrix Proprietary Database