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[183717_at]

Description F20B10.3 /REP_DB=WormBase Gene ID /WP=CE05672 /TR=Q19618 /GB=CAA93463.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      6grp_highest_nonorm > 40      6grp_total > 05      4grp_total > 49      6grp_highest_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1975
1 2 3 4 range
A 66
(-3)
A
2018
(3)
P
1742.2
(2.2)
P
72
(-3)
A
1952
B 42.9
(-3)
A
1934.1
(3)
P
1802.8
(2.6)
P
57.5
(-3)
A
1891
C 59.4
(-3)
A
1836.3
(3)
P
1634.1
(2.3)
P
66.7
(-3)
A
1777
avr 56.1
(-3)
1929.5
(3)
1726.4
(2.3)
65.4
(-3)
1873

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 804
1 2 3 4 5 6 range
A 1113.4
(3)
P
716.6
(-0.4)
P
488.6
(-2.4)
P
581.7
(-1.6)
P
626.2
(-1.2)
P
413.1
(-3)
P
700
B 1059.2
(3)
P
799.2
(0.8)
P
358.2
(-3)
P
604
(-0.9)
P
592.8
(-1)
P
414.7
(-2.5)
P
701
C 1094.6
(3)
P
733.7
(0.2)
P
578.8
(-0.9)
P
516.9
(-1.4)
P
577.9
(-0.9)
P
309.6
(-3)
P
785
avr 1089.1
(3)
749.8
(0.1)
475.2
(-2.2)
567.5
(-1.4)
599
(-1.1)
379.1
(-3)
710
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 559
1 2 3 4 range
A 24
(-2.8)
A
438.1
(2.8)
P
455.5
(3)
P
10.5
(-3)
A
445
B 13.7
(-3)
A
477.7
(3)
P
417.7
(2.2)
P
12.3
(-3)
A
465
C 19.7
(-2.9)
A
528
(2.6)
P
569.5
(3)
P
11.2
(-3)
A
558
avr 19.1
(-2.9)
481.3
(3)
480.9
(3)
11.3
(-3)
470

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 205.3
(1.1)
P
254.9
(3)
P
106.4
(-2.8)
P
147.5
(-1.2)
P
189
(0.4)
P
100.6
(-3)
P
154
B 368.5
(3)
P
266
(0.8)
P
87
(-3)
P
160
(-1.4)
P
240.9
(0.3)
P
154.6
(-1.6)
P
282
C 405.7
(3)
P
223.9
(-0.6)
P
147.3
(-2.1)
P
104
(-3)
P
187
(-1.3)
P
103.6
(-3)
P
302
avr 326.5
(3)
248.3
(0.8)
113.6
(-3)
137.2
(-2.3)
205.6
(-0.4)
119.6
(-2.8)
213
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183717_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8711
Sequence Type Exemplar sequence
Representative Public ID F20B10.3 NCBI
Target Description F20B10.3 /REP_DB=WormBase Gene ID /WP=CE05672 /TR=Q19618 /GB=CAA93463.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069910(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_069910 NCBI Caenorhabditis elegans F20B10.3 (F20B10.3) mRNA, complete cds. 11/11 None
SNAP00000024399 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12168221:12169060:1 11/11 None
GENEFINDER00000024404 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12168221:12169060:1 11/11 None
F20B10.3 ENSEMBL cdna:known chromosome:CEL140:IV:12168215:12169060:1 gene:F20B10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12168226-12169066(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20B10.3
Entrez Gene 184715 Entrez gene
SwissProt Q19618 EMBL-EBI
WormBase CE35499 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93463 Hypothetical protein F20B10.3 [Caenorhabditis elegans] ref|NP_502311.3| F20B10.3 [Caenorhabditis elegans] 9.0E-98
blast CAE62195 Hypothetical protein CBG06243 [Caenorhabditis briggsae] 6.0E-69
blast CAA93463 Hypothetical protein F20B10.3 [Caenorhabditis elegans] ref|NP_502311.3| F20B10.3 [Caenorhabditis elegans] 9.0E-36
blast CAE62195 Hypothetical protein CBG06243 [Caenorhabditis briggsae] 2.0E-29
Sequence
Target Sequence
>C. ELEGANS:183717_AT
gttttgcccttattgctttgttgtttgcattgacttctgcacaaactacaactcaatcaa
aacaaatcagtctggatccgaacgctggaccactcaaacttcgcattgttttccaatccg
aacagccaccacagaccacgaccccaatgcctatcccaatccgaaccatctcttcaaaca
ctgcaccaatcaaggtgatccgtgttccatcttattccaactcgaacaacggatgcttct
ccccaccatgcggagctccaagattcattttcgctcaaccaccatgcttcggaaactcgt
gtggtccacgattcatgttcccacgtcgtcgtcatttcttcggaccacgaccaatcatca
tcggaaacagaaataacggaaacatcaatgccggaggaaatgttgctgttccagatacaa
tctacaagaacggaatggcaattcgtgctccaattcg


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GTTTTGCCCTTATTGCTTTGTTGTT 147 449 23 Antisense
TCAGTCTGGATCCGAACGCTGGACC 230 617 89 Antisense
GGACCACTCAAACTTCGCATTGTTT 68 523 109 Antisense
TTGTTTTCCAATCCGAACAGCCACC 316 707 128 Antisense
TCAAGGTGATCCGTGTTCCATCTTA 232 633 212 Antisense
AACTCGAACAACGGATGCTTCTCCC 585 141 241 Antisense
GCTCCAAGATTCATTTTCGCTCAAC 47 299 277 Antisense
TGCTTCGGAAACTCGTGTGGTCCAC 446 561 307 Antisense
TGTGGTCCACGATTCATGTTCCCAC 503 555 322 Antisense
TCATTTCTTCGGACCACGACCAATC 483 619 354 Antisense
GAATGGCAATTCGTGCTCCAATTCG 248 333 455 Antisense
Sequence Source Affymetrix Proprietary Database