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[183716_at]

Description F20A1.2 /REP_DB=WormBase Gene ID /WP=CE07092 /TR=Q19612 /GB=AAA96128.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 57.4
(3)
A 		6
(-3)
A 		17.8
(-1.6)
A 		54.5
(2.7)
A 		51
B 9.4
(-2.6)
A 		6.4
(-3)
A 		7.2
(-2.9)
A 		51.8
(3)
A 		45
C 54.5
(0.7)
A 		6.8
(-3)
A 		21.9
(-1.8)
A 		84.7
(3)
A 		78
avr 40.4
(0.6) 		6.4
(-3) 		15.6
(-2) 		63.7
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 11.1
(-2.4)
A 		4.4
(-3)
A 		48.5
(0.9)
A 		30.8
(-0.7)
A 		72.9
(3)
A 		60.6
(1.9)
A 		69
B 44.3
(-0.1)
A 		64.3
(3)
A 		39.9
(-0.8)
A 		25.9
(-3)
A 		58.2
(2)
A 		38.5
(-1)
A 		38
C 12.1
(-2.3)
A 		36.3
(0.1)
A 		36.5
(0.2)
A 		64.8
(3)
A 		4.9
(-3)
A 		48
(1.3)
A 		60
avr 22.5
(-3) 		35
(-0.2) 		41.6
(1.3) 		40.5
(1.1) 		45.3
(2.2) 		49
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.9
(3)
A 		1.3
(-3)
A 		4.6
(-2)
A 		8
(-0.9)
A 		20
B 3
(-2.1)
A 		1.6
(-3)
A 		1.7
(-2.9)
A 		11
(3)
A 		9
C 18
(3)
A 		2
(-3)
A 		7.6
(-0.9)
A 		14.3
(1.6)
A 		16
avr 14
(3) 		1.6
(-3) 		4.6
(-1.5) 		11.1
(1.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.1
(-2.9)
A 		1.6
(-3)
A 		10.6
(-0.4)
A 		7.8
(-1.2)
A 		22
(3)
A 		14.7
(0.9)
A 		20
B 15.4
(0.1)
A 		21.4
(2.2)
A 		9.7
(-2)
A 		6.9
(-3)
A 		23.6
(3)
A 		14.3
(-0.3)
A 		17
C 4.5
(-1.8)
A 		11.1
(0.9)
A 		9.3
(0.2)
A 		13
(1.7)
A 		1.6
(-3)
A 		16.1
(3)
A 		15
avr 7.3
(-3) 		11.4
(-0.1) 		9.9
(-1.1) 		9.2
(-1.6) 		15.7
(3) 		15
(2.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11682
Sequence Type Exemplar sequence
Representative Public ID F20A1.2 NCBI
Target Description F20A1.2 /REP_DB=WormBase Gene ID /WP=CE07092 /TR=Q19612 /GB=AAA96128.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072383(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072383 NCBI Caenorhabditis elegans F20A1.2 (F20A1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000026815 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7050257:7051674:1 10/11 None
F20A1.2 ENSEMBL cdna:known chromosome:CEL140:V:7048905:7051674:1 gene:F20A1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026802 7/11 Cross Hyb Matching Probes None
SNAP00000026804 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7048905-7051675(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20A1.2
Entrez Gene 184704 Entrez gene
SwissProt Q19612 EMBL-EBI
WormBase CE35280 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504784 F20A1.2 [Caenorhabditis elegans] gb|AAA96128.2| Hypothetical protein F20A1.2 [Caenorhabditis elegans] 0.0
blast CAE72042 Hypothetical protein CBG19124 [Caenorhabditis briggsae] 0.0
blast NP_504784 F20A1.2 [Caenorhabditis elegans] gb|AAA96128.2| Hypothetical protein F20A1.2 [Caenorhabditis elegans] 2.0E-93
blast CAE72042 Hypothetical protein CBG19124 [Caenorhabditis briggsae] 1.0E-81
blast CAA99800 Hypothetical protein C54D10.5 [Caenorhabditis elegans] ref|NP_506118.1| C54D10.5 [Caenorhabditis elegans] 3.0E-66
blast CAE75484 Hypothetical protein CBG23488 [Caenorhabditis briggsae] 4.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504784.2 7 20-42,55-77,97-119,140-162,197-219,268-290,310-332
F20A1.2 7 20-42,55-77,97-119,140-162,197-219,268-290,310-332
GENEFINDER00000026815 3 10-32,81-103,123-145
Sequence
Target Sequence 
>C. ELEGANS:183716_AT
gggctcaggttagcactctatacacaattcacgatgtttatgggatcgcttgtcttcaaa
cgttttgcccatttctctgtctaatggtgctcaatttggtaatagttaataagctggcca
aaatagatgcacagcagtttcccaccaaagaaatgaagggaagccctacaagaagaaaaa
gatcccgagtgttgtcatcgctgcggataacaaaactacaaatcacatctactgttagaa
atgcaatttatacaatggttagttcaattataaaaattgaaaaattgaaaaaagaaattc
aggtggcaatcgtctcgacgtatctgatctccaactcattgcacatccttctgactctgc
tggaagtgacgaaggcgtcggtgctagtcgacgaaaacgatccttacaaggcatcacttc
tgtacactcttcttggtgacgctgtgagcattctctacatgatctcatcagcagttcgaa
ttctgatctacacctactgcaatcccgcaatccgtcaccaactcttctcattcttcggag
ttcggaaagatcgaaaagattcggatcagtcaagaatcattattgcatcaccgcttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCTCAGGTTAGCACTCTATACAC 486 493 566 Antisense
GATCGCTTGTCTTCAAACGTTTTGC 526 417 609 Antisense
TCCCGAGTGTTGTCATCGCTGCGGA 494 595 748 Antisense
AATCGTCTCGACGTATCTGATCTCC 535 169 873 Antisense
TCTGATCTCCAACTCATTGCACATC 345 609 888 Antisense
ACATCCTTCTGACTCTGCTGGAAGT 295 107 908 Antisense
TGACGAAGGCGTCGGTGCTAGTCGA 326 569 932 Antisense
TCACTTCTGTACACTCTTCTTGGTG 600 625 979 Antisense
GGTGACGCTGTGAGCATTCTCTACA 304 501 1000 Antisense
GTTCGAATTCTGATCTACACCTACT 637 441 1039 Antisense
AATCATTATTGCATCACCGCTTCTT 326 171 1140 Antisense
Sequence Source Affymetrix Proprietary Database