[Home] | [Total List]

[183715_at]

Description F15A4.12 /REP_DB=WormBase Gene ID /WP=CE23656 /TR=Q9U3J2 /GB=CAB54222.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 61      6grp_total > 35      4grp_total > 03      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 654
1 2 3 4 range
A 560.4
(-2.4)
P 		546
(-2.5)
P 		498.9
(-3)
P 		1122.9
(3)
P 		624
B 527.6
(-2.5)
P 		516.2
(-2.7)
P 		496.1
(-3)
P 		911.8
(3)
P 		416
C 540.5
(-2.3)
P 		469.2
(-3)
P 		509.6
(-2.6)
P 		1042.4
(3)
P 		573
avr 542.8
(-2.5) 		510.5
(-2.9) 		501.5
(-3) 		1025.7
(3) 		524

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 394
(-1)
P 		467.1
(1.7)
P 		503.7
(3)
P 		404.6
(-0.6)
P 		379.4
(-1.5)
P 		339.5
(-3)
P 		164
B 557.8
(3)
P 		434.2
(-0.1)
P 		481
(1)
P 		441.5
(0)
P 		321.7
(-3)
P 		435.8
(-0.1)
P 		236
C 529.5
(3)
P 		486.5
(1.7)
P 		419.8
(-0.2)
P 		394.9
(-0.9)
P 		324.8
(-3)
P 		484.5
(1.7)
P 		205
avr 493.8
(3) 		462.6
(1.8) 		468.2
(2) 		413.7
(-0.2) 		342
(-3) 		419.9
(0.1) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 204.1
(3)
P 		118.5
(-3)
P 		130.4
(-2.2)
P 		164.4
(0.2)
P 		86
B 168.3
(1)
P 		127.5
(-2.1)
P 		115
(-3)
P 		194.3
(3)
P 		79
C 178.9
(3)
P 		134.9
(-3)
P 		177.6
(2.8)
P 		175.8
(2.6)
P 		44
avr 183.8
(3) 		127
(-3) 		141
(-1.5) 		178.2
(2.4) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 72.6
(-3)
P 		166.1
(3)
P 		109.7
(-0.6)
P 		102.6
(-1.1)
P 		114.5
(-0.3)
P 		82.7
(-2.4)
P 		94
B 194.1
(3)
P 		144.5
(-0.8)
P 		116.8
(-3)
P 		116.9
(-3)
P 		130.7
(-1.9)
P 		162.5
(0.5)
P 		77
C 196.3
(3)
P 		148.5
(0.5)
P 		106.8
(-1.6)
P 		79.4
(-3)
P 		105.1
(-1.7)
P 		162.2
(1.2)
P 		117
avr 154.3
(3) 		153
(2.9) 		111.1
(-1.7) 		99.6
(-3) 		116.8
(-1.1) 		135.8
(1) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183715_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3132
Sequence Type Exemplar sequence
Representative Public ID F15A4.12 NCBI
Target Description F15A4.12 /REP_DB=WormBase Gene ID /WP=CE23656 /TR=Q9U3J2 /GB=CAB54222.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064252(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064252 NCBI Caenorhabditis elegans F15A4.12 (F15A4.12) mRNA, complete cds. 11/11 None
GENEFINDER00000042555 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12460559:12461315:1 11/11 None
F15A4.12 ENSEMBL cdna:known chromosome:CEL140:II:12460557:12461315:1 gene:F15A4.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042546 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12460555-12461312(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15A4.12
Entrez Gene 174885 Entrez gene
SwissProt Q9U3J2 EMBL-EBI
WormBase CE23656 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54222 Hypothetical protein F15A4.12 [Caenorhabditis elegans] ref|NP_496653.1| F15A4.12 [Caenorhabditis elegans] 1.0E-64
blast CAE73496 Hypothetical protein CBG20953 [Caenorhabditis briggsae] 9.0E-47
Sequence
Target Sequence 
>C. ELEGANS:183715_AT
ggagaaccagttaatcgccgaaaatctcaaatgggcacagcaaagagccgtcgatcttct
caaagtccgcgatcaactacaatgggaagttctcgcggcggcaacgacaaccgtcgtact
tctggcggccggctcgatctacaagcgaaaagacgtgattattcccattgttccgctgat
tatgggctgcggatatcaatatgacgtggcacacggtgacaatcggcagcttgttcgaga
aactgcggtggagttgctgaaaacgcccgaggagcttcacatgcttccagcgatcacgtt
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAACCAGTTAATCGCCGAAAAT 647 517 87 Antisense
AGCAAAGAGCCGTCGATCTTCTCAA 32 77 125 Antisense
ATCTTCTCAAAGTCCGCGATCAACT 422 31 140 Antisense
CTACAATGGGAAGTTCTCGCGGCGG 185 225 163 Antisense
GCGGCAACGACAACCGTCGTACTTC 583 293 184 Antisense
GCCGGCTCGATCTACAAGCGAAAAG 653 281 214 Antisense
AAGACGTGATTATTCCCATTGTTCC 676 153 236 Antisense
CATTGTTCCGCTGATTATGGGCTGC 470 217 252 Antisense
TGGCACACGGTGACAATCGGCAGCT 580 545 293 Antisense
GCTGAAAACGCCCGAGGAGCTTCAC 311 295 342 Antisense
TCACATGCTTCCAGCGATCACGTTA 452 627 363 Antisense
Sequence Source Affymetrix Proprietary Database