[Home] | [Total List]

[183714_at]

Description F42G9.4 /REP_DB=WormBase Gene ID /WP=CE01303 /TR=Q20348 /GB=AAA91351.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4312
1 2 3 4 range
A 494
(-1.9)
P 		179.2
(-3)
P 		169.2
(-3)
A 		1913
(3)
P 		1744
B 480.6
(-2.3)
P 		280.8
(-2.7)
M 		141.1
(-3)
A 		3082.1
(3)
P 		2941
C 446.2
(-2.6)
P 		243.4
(-2.9)
P 		167.5
(-3)
A 		4453
(3)
P 		4286
avr 473.6
(-2.4) 		234.5
(-2.8) 		159.3
(-3) 		3149.4
(3) 		2990

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 451.8
(0.2)
P 		376.5
(-3)
P 		499.9
(2.2)
P 		517.6
(3)
P 		514.8
(2.9)
P 		500.2
(2.3)
P 		141
B 478.1
(-0.1)
P 		526.4
(0.6)
P 		254.1
(-3)
P 		385.5
(-1.3)
P 		463.7
(-0.3)
P 		712.2
(3)
P 		458
C 428.1
(-1)
P 		600.1
(1.5)
P 		287.3
(-3)
P 		349.7
(-2.1)
P 		481.6
(-0.2)
P 		707.6
(3)
P 		420
avr 452.7
(-0.8) 		501
(0.2) 		347.1
(-3) 		417.6
(-1.6) 		486.7
(-0.1) 		640
(3) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 718
1 2 3 4 range
A 179.9
(0.5)
P 		38.9
(-3)
P 		44.2
(-2.9)
A 		280
(3)
P 		241
B 153.3
(-1.8)
P 		69.4
(-2.6)
M 		32.7
(-3)
A 		656.8
(3)
P 		624
C 147.7
(-2.2)
P 		70
(-2.9)
P 		58.4
(-3)
A 		750.9
(3)
P 		693
avr 160.3
(-1.7) 		59.4
(-2.8) 		45.1
(-3) 		562.6
(3) 		518

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 83.3
(-3)
P 		133.9
(1.2)
P 		108.9
(-0.9)
P 		131.3
(1)
P 		155.3
(3)
P 		121.8
(0.2)
P 		72
B 166.4
(0.1)
P 		175.2
(0.3)
P 		61.7
(-3)
P 		102.1
(-1.8)
P 		188.4
(0.7)
P 		265.6
(3)
P 		204
C 158.7
(0.2)
P 		183.1
(1.1)
P 		73.1
(-2.9)
P 		70.3
(-3)
P 		155.8
(0.1)
P 		236.9
(3)
P 		167
avr 136.1
(-0.4) 		164.1
(0.9) 		81.2
(-3) 		101.2
(-2.1) 		166.5
(1) 		208.1
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8261
Sequence Type Exemplar sequence
Representative Public ID F42G9.4 NCBI
Target Description F42G9.4 /REP_DB=WormBase Gene ID /WP=CE01303 /TR=Q20348 /GB=AAA91351.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064851(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064851 NCBI Caenorhabditis elegans F42G9.4 (F42G9.4) mRNA, complete cds. 10/11 None
F42G9.4 ENSEMBL cdna:known chromosome:CEL140:III:761485:762303:1 gene:F42G9.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038509 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:761465-762303(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42G9.4
Entrez Gene 185678 Entrez gene
SwissProt Q20348 EMBL-EBI
WormBase CE30789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91351 Hypothetical protein F42G9.4 [Caenorhabditis elegans] ref|NP_497252.2| F42G9.4 [Caenorhabditis elegans] 2.0E-26
blast CAE69199 Hypothetical protein CBG15239 [Caenorhabditis briggsae] 6.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497252.2 1 5-23
F42G9.4 1 5-23
Sequence
Target Sequence 
>C. ELEGANS:183714_AT
cgtacctcctctaaattcaatcattcttgattctcaagatgtttttattttgagtcattt
ttctaaaggttccacccccactttactccaacttccttcaaatgtgacgggctcgacgga
gtgtgaaagaatcagtgaagtgtactggtacctcttcccaaaaatgttccgtaccctttt
gatctgttttttcttgatggcagctgtcagcatcactagcgcgtatattctcgactatga
tgtcccggaaagacaaacccgtggtgacgtcaagtcggtcttcttctcgccattccgcat
ggttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTACCTCCTCTAAATTCAATCATT 211 247 33 Antisense
ACTCCAACTTCCTTCAAATGTGACG 296 99 117 Antisense
AATGTGACGGGCTCGACGGAGTGTG 546 157 133 Antisense
TGAAGTGTACTGGTACCTCTTCCCA 109 575 168 Antisense
TACCCTTTTGATCTGTTTTTTCTTG 424 649 204 Antisense
GATGGCAGCTGTCAGCATCACTAGC 637 405 228 Antisense
ATCACTAGCGCGTATATTCTCGACT 102 29 244 Antisense
TATTCTCGACTATGATGTCCCGGAA 531 663 258 Antisense
GAAAGACAAACCCGTGGTGACGTCA 190 353 280 Antisense
TGGTGACGTCAAGTCGGTCTTCTTC 683 551 294 Antisense
TTCTCGCCATTCCGCATGGTTGGAA 312 693 316 Antisense
Sequence Source Affymetrix Proprietary Database