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[183713_at]

Description C24G7.2 /REP_DB=WormBase Gene ID /WP=CE08352 /TR=P91102 /GB=AAB42338.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 82      4grp_high_8_8 > 55      6grp_total > 70      4grp_total > 48      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 65.4
(-3)
P 		103
(-0.1)
P 		144
(3)
P 		100
(-0.4)
A 		79
B 76.2
(-1.6)
P 		119.6
(0.7)
P 		162.9
(3)
P 		48.6
(-3)
P 		114
C 69.9
(-3)
P 		116
(1)
P 		138.3
(3)
P 		107.6
(0.3)
P 		68
avr 70.5
(-3) 		112.9
(0.3) 		148.4
(3) 		85.4
(-1.9) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 56.8
(-2.8)
A 		52.8
(-3)
P 		117.1
(-0.3)
P 		195
(3)
P 		123.2
(-0)
P 		77.9
(-1.9)
P 		142
B 35.8
(-3)
P 		61.1
(-2.1)
P 		121
(0.1)
P 		201.2
(3)
P 		159.7
(1.5)
P 		90.3
(-1)
P 		165
C 45.2
(-3)
A 		51.8
(-2.8)
P 		95.1
(-1.2)
P 		209
(3)
P 		143.8
(0.6)
P 		83.9
(-1.6)
P 		164
avr 45.9
(-3) 		55.2
(-2.6) 		111.1
(-0.5) 		201.7
(3) 		142.2
(0.7) 		84
(-1.5) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 23.8
(-0.6)
P 		22.4
(-1)
P 		37.7
(3)
P 		14.6
(-3)
A 		23
B 24.3
(0)
P 		29.5
(1.2)
P 		37.8
(3)
P 		10.4
(-3)
P 		27
C 23.1
(-2)
P 		33.3
(0)
P 		48.2
(3)
P 		18.1
(-3)
P 		30
avr 23.7
(-0.9) 		28.4
(0.1) 		41.2
(3) 		14.4
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 10.5
(-3)
A 		18.8
(-1.7)
P 		25.5
(-0.7)
P 		49.5
(3)
P 		37.2
(1.1)
P 		19
(-1.7)
P 		39
B 12.5
(-3)
P 		20.3
(-2.1)
P 		29.4
(-1.1)
P 		53.3
(1.7)
P 		64.9
(3)
P 		33.7
(-0.6)
P 		52
C 16.8
(-2.8)
A 		15.8
(-3)
P 		24.2
(-1.4)
P 		42
(2.1)
P 		46.5
(3)
P 		28.1
(-0.6)
P 		31
avr 13.3
(-3) 		18.3
(-2.2) 		26.4
(-0.8) 		48.3
(2.8) 		49.5
(3) 		26.9
(-0.7) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183713_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.813
Sequence Type Exemplar sequence
Representative Public ID C24G7.2 NCBI
Target Description C24G7.2 /REP_DB=WormBase Gene ID /WP=CE08352 /TR=P91102 /GB=AAB42338.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058894(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058894 NCBI Caenorhabditis elegans C24G7.2 (C24G7.2) mRNA, complete cds. 10/11 None
SNAP00000001460 ENSEMBL cdna:SNAP chromosome:CEL140:I:4103714:4107968:1 10/11 None
GENEFINDER00000001481 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4103714:4107968:1 10/11 None
C24G7.2 ENSEMBL cdna:known chromosome:CEL140:I:4103714:4108046:1 gene:C24G7.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4103713-4107700(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24G7.2
Entrez Gene 182852 Entrez gene
SwissProt P91102 EMBL-EBI
WormBase CE37320 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6814 sodium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5272 sodium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42338 Hypothetical protein C24G7.2 [Caenorhabditis elegans] ref|NP_491295.2| C24G7.2 [Caenorhabditis elegans] 0.0
blast CAE66721 Hypothetical protein CBG12067 [Caenorhabditis briggsae] 0.0
blast AAB42337 Hypothetical protein C24G7.1 [Caenorhabditis elegans] ref|NP_491296.1| C24G7.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 2.0E-68
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 1.3E-46
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491295.2 2 102-124,521-543
C24G7.2 2 102-124,521-543
SNAP00000001460 1 393-415
GENEFINDER00000001481 2 102-124,521-543
Sequence
Target Sequence 
>C. ELEGANS:183713_AT
caaactccaaattgcaaggcttgtgctcaacagtgtaacagtttggtttaccgtgcctat
aattcatatggtagtcagttttccgctggagcattccattatcttaaatctataaatccg
gaatggactgatggacacatgagagcaaattttcaaatgatcaacattttctaccgagac
atgtcttacacagaatataatcaagttcaagatgcatctgtcacgcaacttctcagtgac
attggtggtaatatgggaatgttcttgggaatgtcagtcatcactatcactgaaatttgt
ctcttcttctcgaaaatgttctggttaggattttcgaaaaaacgaagggactatatgtat
tcgaaaagagttaatgagaagactcatgagagagaagtttgcgagacagttgagaaaatg
aaagcgatagcgtcgcagggaaatttgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACTCCAAATTGCAAGGCTTGTG 590 191 1315 Antisense
AAGGCTTGTGCTCAACAGTGTAACA 209 161 1330 Antisense
TTTGGTTTACCGTGCCTATAATTCA 625 265 1356 Antisense
ATGGTAGTCAGTTTTCCGCTGGAGC 517 51 1382 Antisense
TTCCGCTGGAGCATTCCATTATCTT 200 699 1395 Antisense
ATGATCAACATTTTCTACCGAGACA 182 47 1471 Antisense
AAGATGCATCTGTCACGCAACTTCT 38 155 1523 Antisense
GCAACTTCTCAGTGACATTGGTGGT 371 319 1539 Antisense
GGGAATGTCAGTCATCACTATCACT 124 495 1581 Antisense
CACTATCACTGAAATTTGTCTCTTC 462 197 1596 Antisense
GATAGCGTCGCAGGGAAATTTGTCG 676 423 1740 Antisense
Sequence Source Affymetrix Proprietary Database