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[183712_at]

Description Y54G9A.1 /REP_DB=WormBase Gene ID /WP=CE19229 /TR=Q9XWH1 /GB=CAA21697.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5
(-2.4)
A 		2.8
(-2.7)
A 		1.2
(-3)
A 		37
(3)
A 		36
B 14.3
(0.3)
A 		2.8
(-3)
A 		4.1
(-2.6)
A 		23.7
(3)
A 		21
C 5
(-2.1)
A 		2.5
(-2.9)
A 		2.2
(-3)
A 		21.1
(3)
A 		19
avr 8.1
(-1.6) 		2.7
(-3) 		2.5
(-3) 		27.3
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.7
(-2.6)
A 		1.6
(-2.9)
A 		3.3
(-2.4)
A 		1.1
(-3)
A 		22.5
(3)
A 		3.3
(-2.4)
A 		21
B 0.7
(-3)
A 		1.3
(-2.8)
A 		1.5
(-2.7)
A 		17.8
(3)
A 		3.5
(-2)
A 		15.4
(2.2)
A 		17
C 11
(3)
A 		8.8
(1.6)
A 		1.4
(-3)
A 		1.9
(-2.7)
A 		10.3
(2.6)
A 		1.5
(-2.9)
A 		10
avr 4.8
(-1.4) 		3.9
(-1.9) 		2.1
(-3) 		6.9
(-0.1) 		12.1
(3) 		6.7
(-0.2) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.8
(-1.2)
A 		0.6
(-2.6)
A 		0.3
(-3)
A 		5.4
(3)
A 		5
B 4.6
(2.3)
A 		0.7
(-3)
A 		1
(-2.6)
A 		5.1
(3)
A 		4
C 1.7
(-0.9)
A 		0.7
(-3)
A 		0.8
(-2.8)
A 		3.6
(3)
A 		3
avr 2.7
(0) 		0.7
(-3) 		0.7
(-3) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.5
(-2.8)
A 		0.6
(-2.7)
A 		0.7
(-2.6)
A 		0.3
(-3)
A 		6.8
(3)
A 		0.8
(-2.5)
A 		7
B 0.2
(-3)
A 		0.4
(-2.8)
A 		0.4
(-2.8)
A 		4.7
(1.8)
A 		1.4
(-1.7)
A 		5.8
(3)
A 		6
C 4.1
(3)
A 		2.7
(0.8)
A 		0.3
(-3)
A 		0.4
(-2.8)
A 		3.3
(1.7)
A 		0.5
(-2.7)
A 		4
avr 1.6
(-1) 		1.2
(-1.7) 		0.5
(-3) 		1.8
(-0.6) 		3.8
(3) 		2.4
(0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183712_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3811
Sequence Type Exemplar sequence
Representative Public ID Y54G9A.1 NCBI
Target Description Y54G9A.1 /REP_DB=WormBase Gene ID /WP=CE19229 /TR=Q9XWH1 /GB=CAA21697.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064472(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064472 NCBI Caenorhabditis elegans Y54G9A.1 (Y54G9A.1) mRNA, complete cds. 11/11 None
Y54G9A.1 ENSEMBL cdna:known chromosome:CEL140:II:13699216:13700842:1 gene:Y54G9A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13699212-13700839(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G9A.1
Entrez Gene 190291 Entrez gene
SwissProt Q9XWH1 EMBL-EBI
WormBase CE19229 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21697 Hypothetical protein Y54G9A.1 [Caenorhabditis elegans] ref|NP_496873.1| Y54G9A.1 [Caenorhabditis elegans] 2.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496873.1 1 21-43
Y54G9A.1 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:183712_AT
agaagacattccatttttcggatgaatcggctcaaaatgagcacgtttacctactttttt
gggggctcttttgtgtctggggtagccacctacgctatgaattgggttttttctctaaaa
tttggatttttcacgaattcatttgtattggaaaccgattttgtagtgtacatagagatc
caagtgaccaaaaagagggaacacaagtcagaagcccatagtttttttttgacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGACATTCCATTTTTCGGATGA 244 71 34 Antisense
CCATTTTTCGGATGAATCGGCTCAA 314 269 44 Antisense
ATGAGCACGTTTACCTACTTTTTTG 503 45 70 Antisense
GCTCTTTTGTGTCTGGGGTAGCCAC 628 293 98 Antisense
GGTAGCCACCTACGCTATGAATTGG 216 503 114 Antisense
GCTATGAATTGGGTTTTTTCTCTAA 7 303 127 Antisense
AATTTGGATTTTTCACGAATTCATT 34 175 152 Antisense
TGGAAACCGATTTTGTAGTGTACAT 540 547 182 Antisense
GTGTACATAGAGATCCAAGTGACCA 109 487 199 Antisense
GGAACACAAGTCAGAAGCCCATAGT 565 527 231 Antisense
GAAGCCCATAGTTTTTTTTTGACAG 342 341 244 Antisense
Sequence Source Affymetrix Proprietary Database