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[183711_at]

Description T09E11.4 /REP_DB=WormBase Gene ID /WP=CE13503 /TR=O02306 /GB=CAB03533.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 59.6
(-3)
A 		110.2
(0.8)
A 		131.2
(2.3)
P 		140.1
(3)
A 		81
B 84.7
(0.3)
A 		65
(-1.9)
A 		55.6
(-3)
A 		108.9
(3)
A 		53
C 72.7
(-1.9)
A 		71.5
(-1.9)
A 		46.2
(-3)
A 		186.4
(3)
P 		140
avr 72.3
(-3) 		82.2
(-2.2) 		77.7
(-2.6) 		145.1
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 97
(2.3)
A 		74.3
(-0.9)
A 		59.1
(-3)
A 		79.9
(-0.1)
A 		101.8
(3)
P 		86.2
(0.8)
A 		43
B 64.8
(-3)
A 		123.9
(3)
M 		70.1
(-2.5)
A 		65.9
(-2.9)
A 		97.6
(0.3)
A 		69.8
(-2.5)
P 		59
C 71.2
(-1.3)
A 		88.6
(0.4)
P 		116.1
(3)
A 		79.8
(-0.5)
A 		71.1
(-1.3)
A 		53.7
(-3)
A 		62
avr 77.7
(-1.2) 		95.6
(3) 		81.8
(-0.2) 		75.2
(-1.8) 		90.2
(1.7) 		69.9
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 21.7
(-2.5)
A 		23.9
(-1.5)
A 		34.3
(3)
P 		20.5
(-3)
A 		14
B 27
(3)
A 		16.1
(-1.6)
A 		12.9
(-3)
A 		23.2
(1.4)
A 		14
C 24.1
(0.1)
A 		20.6
(-1.2)
A 		16.1
(-3)
A 		31.4
(3)
P 		15
avr 24.3
(2.1) 		20.2
(-3) 		21.1
(-1.9) 		25
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 17.9
(-1.3)
A 		26.4
(1.6)
A 		12.9
(-3)
A 		20.3
(-0.5)
A 		30.7
(3)
P 		21
(-0.3)
A 		18
B 22.6
(-1.6)
A 		41.2
(3)
M 		17
(-3)
A 		17.5
(-2.9)
A 		39.7
(2.6)
A 		26
(-0.8)
P 		24
C 26.4
(1.6)
A 		27
(1.8)
P 		29.6
(3)
A 		16.1
(-3)
A 		23
(0.1)
A 		18
(-2.2)
A 		14
avr 22.3
(-1.1) 		31.5
(3) 		19.8
(-2.2) 		18
(-3) 		31.1
(2.8) 		21.7
(-1.4) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183711_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2347
Sequence Type Exemplar sequence
Representative Public ID T09E11.4 NCBI
Target Description T09E11.4 /REP_DB=WormBase Gene ID /WP=CE13503 /TR=O02306 /GB=CAB03533.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060728(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060728 NCBI Caenorhabditis elegans T09E11.4 (T09E11.4) mRNA, complete cds. 10/11 None
GENEFINDER00000042475 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12358814:12376741:1 10/11 None
SNAP00000042468 ENSEMBL cdna:SNAP chromosome:CEL140:I:12368064:12371538:1 10/11 None
T09E11.4 ENSEMBL cdna:known chromosome:CEL140:I:12368064:12371538:1 gene:T09E11.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12367994-12370792(+) 98.77 100.0
Public Domain and Genome References
Gene Title
Ensembl T09E11.4
Entrez Gene 188332 Entrez gene
SwissProt O02306 EMBL-EBI
WormBase CE37551 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03533 Hypothetical protein T09E11.4 [Caenorhabditis elegans] ref|NP_493129.2| T09E11.4 [Caenorhabditis elegans] 0.0
blast CAB03534 Hypothetical protein T09E11.7 [Caenorhabditis elegans] ref|NP_493127.1| T09E11.7 [Caenorhabditis elegans] 0.0
blast CAE62223 Hypothetical protein CBG06274 [Caenorhabditis briggsae] 0.0
blast CAB03535 Hypothetical protein T09E11.8 [Caenorhabditis elegans] ref|NP_493126.1| T09E11.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.8E-119
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 4.1E-80
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 2.6E-94
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.4E-114
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.1E-112
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.8E-119
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493129.2 9 12-29,49-71,78-100,141-163,170-187,261-280,289-308,318-340,347-368
T09E11.4 9 12-29,49-71,78-100,141-163,170-187,261-280,289-308,318-340,347-368
GENEFINDER00000042475 30 538-560,572-589,609-631,638-660,708-725,730-747,801-818,825-842,852-874,881-903,913-930,1182-1199,1219-1241,1248-1270,1307-1329,1341-1363,1402-1421,1428-1447,1451-1473,1480-1502,1512-1529,1779-1796,1816-1838,1845-1867,1908-1930,1937-1954,2028-2047,2056-2075,2085-2107,2114-2135
SNAP00000042468 9 12-29,49-71,78-100,141-163,170-187,261-280,289-308,318-340,347-368
Sequence
Target Sequence 
>C. ELEGANS:183711_AT
tgacagacctcactggacttgtgccacctaagtgtacacgggagacaccgggcaaagatt
ggtgtaattatgaggtaaatggcaccgacttgaaactggcagttttaggaaacagtattg
ccgagaatcatttgaaaatgttcattcaagaatgtggatatagatcctataatcttagag
cgtacacgtttaatggttgtgaaccgttagccgcatttgagacggagccacattgcaaga
ttcaattaaaggaatatgatagtttccttaaaaatacacaaccggactatgcattcattt
tcacacgatttttcgccacaggatttgttacaaactcaaactctacagaaaccgacccgg
tctatctagaaatgagggatcaaatgagaaaattcattccaaatatcaaaaagaagttgt
atattctggatgcattcccaagagttgaaatgtcatatactttgaaagtggcaagggatt
tgaaaaatggaaggaatttggatgatattcatgtaaggatgttgattgattttgagctga
tttttacagtaaatgcggcaaaatgctggtttgccgatttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACAGACCTCACTGGACTTGTGCC 228 571 1349 Antisense
GGACTTGTGCCACCTAAGTGTACAC 345 521 1363 Antisense
GTGTACACGGGAGACACCGGGCAAA 546 467 1380 Antisense
ATGGCACCGACTTGAAACTGGCAGT 654 51 1427 Antisense
GTGAACCGTTAGCCGCATTTGAGAC 605 481 1547 Antisense
GAGACGGAGCCACATTGCAAGATTC 705 391 1567 Antisense
TTTTCACACGATTTTTCGCCACAGG 169 675 1646 Antisense
TCAAACTCTACAGAAACCGACCCGG 495 627 1684 Antisense
AACCGACCCGGTCTATCTAGAAATG 100 97 1698 Antisense
GTATATTCTGGATGCATTCCCAAGA 655 451 1767 Antisense
CAAAATGCTGGTTTGCCGATTTCCC 503 189 1907 Antisense
Sequence Source Affymetrix Proprietary Database