[Home] | [Total List]

[183709_at]

Description T23G11.7 /REP_DB=WormBase Gene ID /WP=CE16459 /TR=P90969 /GB=CAB03420.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 28      6grp_total > 88      4grp_total > 27      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 87
(-3)
P 		126
(3)
P 		88.4
(-2.8)
P 		125.4
(2.9)
P 		39
B 76.4
(-3)
P 		99.7
(3)
P 		90.3
(0.6)
M 		87.5
(-0.1)
P 		23
C 82.4
(0.7)
P 		76
(-0.1)
P 		54.3
(-3)
P 		99.5
(3)
P 		45
avr 81.9
(-2) 		100.6
(2.2) 		77.7
(-3) 		104.1
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 76.9
(-1.8)
P 		51.7
(-3)
P 		75.1
(-1.9)
P 		72.2
(-2)
P 		103.2
(-0.6)
P 		177.9
(3)
P 		126
B 64.7
(-2.7)
P 		59.2
(-3)
P 		103.3
(-0.6)
P 		77.8
(-2)
P 		126.8
(0.7)
P 		168.7
(3)
P 		110
C 101.3
(-0.1)
P 		61.4
(-2.5)
M 		54.1
(-3)
P 		64
(-2.4)
A 		125.4
(1.4)
P 		150.6
(3)
P 		97
avr 81
(-1.7) 		57.4
(-3) 		77.5
(-1.9) 		71.3
(-2.2) 		118.5
(0.4) 		165.7
(3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 31.7
(3)
P 		27.4
(1.1)
P 		23.1
(-0.9)
P 		18.4
(-3)
P 		13
B 24.4
(2.8)
P 		24.6
(3)
P 		20.9
(-0.7)
M 		18.6
(-3)
P 		6
C 27.3
(3)
P 		21.8
(-0.1)
P 		18.9
(-1.8)
P 		16.8
(-3)
P 		11
avr 27.8
(3) 		24.6
(1.1) 		21
(-1.1) 		17.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 14.2
(-3)
P 		18.4
(-2.1)
P 		16.4
(-2.5)
P 		18.3
(-2.2)
P 		31.1
(0.5)
P 		43.3
(3)
P 		29
B 22.5
(-2.6)
P 		19.7
(-3)
P 		25.1
(-2.3)
P 		20.6
(-2.9)
P 		51.5
(1.4)
P 		62.9
(3)
P 		43
C 37.5
(0.9)
P 		18.7
(-2.1)
M 		13.8
(-2.9)
P 		12.9
(-3)
A 		40.6
(1.4)
P 		50.4
(3)
P 		38
avr 24.7
(-1.7) 		18.9
(-2.7) 		18.4
(-2.8) 		17.3
(-3) 		41.1
(1.1) 		52.2
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2342
Sequence Type Exemplar sequence
Representative Public ID T23G11.7 NCBI
Target Description T23G11.7 /REP_DB=WormBase Gene ID /WP=CE16459 /TR=P90969 /GB=CAB03420.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059737(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059737 NCBI Caenorhabditis elegans T23G11.7a (T23G11.7) mRNA, complete cds. 11/11 None
SNAP00000027644 ENSEMBL cdna:SNAP chromosome:CEL140:I:7687583:7690911:1 10/11 None
GENEFINDER00000027663 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7687583:7690911:1 11/11 None
T23G11.7a ENSEMBL cdna:known chromosome:CEL140:I:7687581:7688917:1 gene:T23G11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172528 2 1 NM_059737 183709_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7687513-7688780(+) 100.0 100.0
Public Domain and Genome References
Ensembl T23G11.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03420 Hypothetical protein T23G11.7a [Caenorhabditis elegans] ref|NP_492138.1| T23G11.7a [Caenorhabditis elegans] 0.0
blast CAB03419 Hypothetical protein T23G11.7b [Caenorhabditis elegans] ref|NP_492139.2| T23G11.7b [Caenorhabditis elegans] 1.0E-139
blast CAB03419 Hypothetical protein T23G11.7b [Caenorhabditis elegans] ref|NP_492139.2| T23G11.7b [Caenorhabditis elegans] 1.0E-137
blast CAE57364 Hypothetical protein CBG00308 [Caenorhabditis briggsae] 1.0E-98
blast CAE57363 Hypothetical protein CBG00307 [Caenorhabditis briggsae] 3.0E-97
blast CAE57364 Hypothetical protein CBG00308 [Caenorhabditis briggsae] 3.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR006745 EMBL-EBI Protein of unknown function DUF605 8.5E-110
Pfam IPR006745 EMBL-EBI Protein of unknown function DUF605 3.1E-22
Pfam IPR006745 EMBL-EBI Protein of unknown function DUF605 9.8E-102
Pfam IPR006745 EMBL-EBI Protein of unknown function DUF605 3.1E-22
Sequence
Target Sequence 
>C. ELEGANS:183709_AT
ggccagcatctgaagcaattactactaaaaactgtcaatgtcagctaatcgatacgatcc
gtggacttcatattcctcaaatcactcacattttcaatcactcggaggctccaactctaa
ccgcacttcaaaatctgactcatctcttcaatgtgatttgtaaagttctacactttgctc
caaaatatcccattctgacaaatcttcaaatcatcaacccaattgatcagaaaagttcaa
tattcacggagaaatgttggaagaagaaggcagatcgtgagaaactgattgagggaatgt
cctggttgagtaaaaatatcagtcatcttcgtgaaagttgtggaattccgacaatggcga
ctgacagaattctcggaacacttgaagaatggattcgattagttattcgcaaggaaactg
ttttcgagagacccattaatagtatctttagtcccgcaaactta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCAGCATCTGAAGCAATTACTAC 574 543 593 Antisense
ACGATCCGTGGACTTCATATTCCTC 86 95 646 Antisense
TCATATTCCTCAAATCACTCACATT 166 621 660 Antisense
ACATTTTCAATCACTCGGAGGCTCC 108 105 680 Antisense
CAACTCTAACCGCACTTCAAAATCT 436 185 704 Antisense
AAATCTGACTCATCTCTTCAATGTG 607 117 723 Antisense
GTAAAGTTCTACACTTTGCTCCAAA 411 461 752 Antisense
GCTCCAAAATATCCCATTCTGACAA 5 299 769 Antisense
GGAATTCCGACAATGGCGACTGACA 697 533 934 Antisense
GAAACTGTTTTCGAGAGACCCATTA 72 357 1006 Antisense
TAGTATCTTTAGTCCCGCAAACTTA 528 651 1032 Antisense
Sequence Source Affymetrix Proprietary Database