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[183708_at]

Description C48E7.2 /REP_DB=WormBase Gene ID /WP=CE08817 /TR=O02081 /GB=AAK21357.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 85      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 85      6grp_total > 76      4grp_total > 14      6grp_highest_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 690
1 2 3 4 range
A 772.3
(-0.1)
P 		435.2
(-3)
P 		581.4
(-1.7)
P 		1125.6
(3)
P 		690
B 918.8
(1.8)
P 		582.1
(-2.5)
P 		538.5
(-3)
P 		1015.3
(3)
P 		477
C 714.2
(0.7)
P 		498.4
(-3)
P 		538.1
(-2.3)
P 		845.1
(3)
P 		347
avr 801.8
(0.6) 		505.2
(-3) 		552.7
(-2.4) 		995.3
(3) 		490

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 639
1 2 3 4 5 6 range
A 621.4
(-2.4)
P 		589.1
(-3)
P 		730.7
(-0.5)
P 		649.9
(-1.9)
P 		914.6
(2.9)
P 		922.7
(3)
P 		334
B 637.6
(-2.4)
P 		583.4
(-3)
P 		708.7
(-1.5)
P 		709.4
(-1.5)
P 		695.4
(-1.7)
P 		1096.4
(3)
P 		513
C 467.8
(-3)
P 		556.1
(-2.2)
P 		821.1
(0.3)
P 		1029.9
(2.3)
P 		557.5
(-2.2)
P 		1106.9
(3)
P 		639
avr 575.6
(-3) 		576.2
(-3) 		753.5
(-0.7) 		796.4
(-0.2) 		722.5
(-1.1) 		1042
(3) 		466
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 281.2
(3)
P 		94.5
(-3)
P 		152
(-1.2)
P 		164.8
(-0.7)
P 		187
B 293
(3)
P 		143.8
(-2.3)
P 		124.8
(-3)
P 		216.4
(0.3)
P 		168
C 236.4
(3)
P 		143.3
(-2.9)
P 		187.5
(-0.1)
P 		142.5
(-3)
P 		94
avr 270.2
(3) 		127.2
(-3) 		154.8
(-1.8) 		174.6
(-1) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 114.6
(-3)
P 		209.5
(0.5)
P 		159.1
(-1.3)
P 		164.8
(-1.1)
P 		276
(3)
P 		224.6
(1.1)
P 		161
B 221.8
(-1.7)
P 		194.2
(-2.4)
P 		172.1
(-3)
P 		187.9
(-2.6)
P 		282.5
(-0.2)
P 		408.9
(3)
P 		237
C 173.4
(-2.9)
P 		169.7
(-3)
P 		209
(-1.8)
P 		207.1
(-1.9)
P 		180.4
(-2.7)
P 		370.5
(3)
P 		201
avr 169.9
(-3) 		191.1
(-2.2) 		180.1
(-2.6) 		186.6
(-2.4) 		246.3
(-0.2) 		334.7
(3) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183708_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1418
Sequence Type Exemplar sequence
Representative Public ID C48E7.2 NCBI
Target Description C48E7.2 /REP_DB=WormBase Gene ID /WP=CE08817 /TR=O02081 /GB=AAK21357.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059406 NCBI Caenorhabditis elegans C48E7.2 (C48E7.2) mRNA, complete cds. 11/11 None
SNAP00000002344 ENSEMBL cdna:SNAP chromosome:CEL140:I:6263177:6265655:1 10/11 None
GENEFINDER00000002355 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6263177:6265655:1 11/11 None
C48E7.2 ENSEMBL cdna:known chromosome:CEL140:I:6263170:6265870:1 gene:C48E7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6263105-6265584(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48E7.2
Entrez Gene 172321 Entrez gene
SwissProt Q8IG67 EMBL-EBI
WormBase CE08817 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252292_AT RNA polymerase III subunit RPC82 family protein at
CANINE_2:CFAAFFX.17554.1.S1_S_AT similar to polymerase (RNA) III (DNA directed) polypeptide C (62kD) cfa
DROSGENOME1:154308_AT dm
DROSOPHILA_2:1636922_AT dm
HG-U133_PLUS_2:210573_S_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HG-U133A:210573_S_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HG-U133A_2:210573_S_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HG-U95AV2:782_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HC-G110:782_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HG-U133A:209382_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HG-U133_PLUS_2:209382_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HG-U133A_2:209382_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HG-FOCUS:209382_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HU35KSUBA:U93867_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HUGENEFL:U93867_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
U133_X3P:G2228747_3P_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
U133_X3P:G13325209_3P_A_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HG-U95AV2:34671_AT polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HG-U133_PLUS_2:239134_AT Polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HG-U133B:239134_AT Polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
HG-U95D:78995_AT Polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
U133_X3P:HS.136375.0.A1_3P_AT Polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
U133_X3P:HS.136375.0.A1_3P_X_AT Polymerase (RNA) III (DNA directed) polypeptide C (62kD) hs
MG-U74BV2:117163_AT polymerase (RNA) III (DNA directed) polypeptide C mm
MOUSE430_2:1451658_A_AT polymerase (RNA) III (DNA directed) polypeptide C mm
MOE430A:1451658_A_AT polymerase (RNA) III (DNA directed) polypeptide C mm
MOUSE430A_2:1451658_A_AT polymerase (RNA) III (DNA directed) polypeptide C mm
MOUSE430A_2:1453256_AT polymerase (RNA) III (DNA directed) polypeptide C mm
MOE430A:1453256_AT polymerase (RNA) III (DNA directed) polypeptide C mm
MOUSE430_2:1453256_AT polymerase (RNA) III (DNA directed) polypeptide C mm
MG-U74BV2:117164_G_AT polymerase (RNA) III (DNA directed) polypeptide C mm
MG-U74CV2:131197_AT polymerase (RNA) III (DNA directed) polypeptide C mm
MG-U74BV2:163608_AT polymerase (RNA) III (DNA directed) polypeptide C mm
MOE430B:1456803_AT Polymerase (RNA) III (DNA directed) polypeptide C, mRNA (cDNA clone MGC:25832 IMAGE:4168218) mm
MOUSE430_2:1456803_AT Polymerase (RNA) III (DNA directed) polypeptide C, mRNA (cDNA clone MGC:25832 IMAGE:4168218) mm
MU19KSUBA:TC16165_AT Polymerase (RNA) III (DNA directed) polypeptide C, mRNA (cDNA clone MGC:25832 IMAGE:4168218) mm
MU19KSUBA:TC23789_AT Polymerase (RNA) III (DNA directed) polypeptide C, mRNA (cDNA clone MGC:25832 IMAGE:4168218) mm
RAE230B:1380256_AT polymerase (RNA) III (DNA directed) polypeptide C (predicted) rn
RAT230_2:1380256_AT polymerase (RNA) III (DNA directed) polypeptide C (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6350 transcription inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3899 DNA-directed RNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAN60523 Hypothetical protein C48E7.2 [Caenorhabditis elegans] ref|NP_491807.1| C48E7.2 [Caenorhabditis elegans] 0.0
blast CAE67152 Hypothetical protein CBG12577 [Caenorhabditis briggsae] 0.0
blast AAH75179 Polr3c-prov protein [Xenopus laevis] 4.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR008806 EMBL-EBI RNA polymerase III subunit RPC82 1.2E-15
Pfam IPR008806 EMBL-EBI RNA polymerase III subunit RPC82 2.3E-24
Pfam IPR008806 EMBL-EBI RNA polymerase III subunit RPC82 1.6E-20
Sequence
Target Sequence 
>C. ELEGANS:183708_AT
attgtcgacattcgtcgcgctattcgtcaaatctgtcgtcatcactgtgaatcgctcatc
agagaacagttcgaaggacgtgcaattcgagttatgagacttcttgaaaatcgtcattat
ctggatgaagaacaagtagagaagttgagcatgatgagtggaaaagaagcaagagaaatg
ttatacgcattagttgaagaaggatatgtgttcaataagcctgtcggtcgtagcaacgat
ttccaacccgctcgcacattctatctctactatgtagatctacctcgtactattcgtggt
ctcgtagagtacacttgcaaattggtccgaaaccttattgttcgtcaacgacatgaacga
actgaaaataaatcggtgctcgacaaggatgcgaatgttcaaccaattattgaaaacatt
cgctcttctgagcaactcgatgaagcttcaaagttggcacaaattgcagaagttgaagaa
atgtaccttcctggtccagatcgtgcacaattgaatcgcttccgtaaagctcaggctact
ttgctggctgctcaggatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTCGACATTCGTCGCGCTATTC 320 5 1033 Antisense
CGCTATTCGTCAAATCTGTCGTCAT 452 255 1050 Antisense
GTCATCACTGTGAATCGCTCATCAG 444 467 1070 Antisense
GTTCAATAAGCCTGTCGGTCGTAGC 559 413 1242 Antisense
GGTCGTAGCAACGATTTCCAACCCG 261 493 1258 Antisense
CTCGCACATTCTATCTCTACTATGT 571 233 1283 Antisense
GATCTACCTCGTACTATTCGTGGTC 610 419 1309 Antisense
AACATTCGCTCTTCTGAGCAACTCG 569 137 1447 Antisense
TACCTTCCTGGTCCAGATCGTGCAC 484 649 1516 Antisense
ATCGTGCACAATTGAATCGCTTCCG 158 35 1532 Antisense
CTACTTTGCTGGCTGCTCAGGATCA 295 227 1568 Antisense
Sequence Source Affymetrix Proprietary Database