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[183707_s_at]

Description ZK973.9 /REP_DB=WormBase Gene ID /WP=CE23479 /TR=Q9N4L9 /GB=AAF40004.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 278.2
(2.7)
P 		281.9
(3)
A 		252
(1)
A 		193.6
(-3)
P 		88
B 328.2
(3)
P 		225.9
(-1.7)
M 		197.7
(-3)
A 		212.1
(-2.3)
P 		131
C 234
(0.4)
P 		252.2
(2.1)
A 		197.2
(-3)
A 		262.4
(3)
P 		65
avr 280.1
(3) 		253.3
(0.5) 		215.6
(-3) 		222.7
(-2.3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 312.1
(2.5)
P 		280.6
(1.5)
P 		137.7
(-3)
A 		160.6
(-2.3)
A 		226.3
(-0.2)
M 		327.9
(3)
P 		190
B 231.9
(0.9)
P 		179.8
(-3)
A 		221.7
(0.1)
P 		184.2
(-2.7)
A 		260.9
(3)
P 		254.9
(2.6)
P 		81
C 259
(1)
P 		182.2
(-3)
A 		191.6
(-2.5)
A 		210.5
(-1.5)
A 		298.8
(3)
P 		273.3
(1.7)
P 		117
avr 267.7
(2) 		214.2
(-1.2) 		183.7
(-3) 		185.1
(-2.9) 		262
(1.6) 		285.4
(3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 101.3
(3)
P 		61.2
(-0.3)
A 		65.9
(0.1)
A 		28.3
(-3)
P 		73
B 104.7
(3)
P 		55.8
(-1.9)
M 		45.8
(-2.9)
A 		45.2
(-3)
P 		60
C 77.4
(3)
P 		72.5
(2.1)
A 		68.7
(1.4)
A 		44.2
(-3)
P 		33
avr 94.5
(3) 		63.2
(-0.4) 		60.1
(-0.7) 		39.2
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 57.5
(-0.6)
P 		99.8
(3)
P 		30
(-3)
A 		40.7
(-2.1)
A 		68.3
(0.3)
M 		79.8
(1.3)
P 		70
B 80.7
(0.3)
P 		59.9
(-1.8)
A 		53.8
(-2.5)
P 		48.8
(-3)
A 		106
(3)
P 		95.1
(1.9)
P 		57
C 96
(2.9)
P 		55.6
(-1.5)
A 		48.8
(-2.3)
A 		42.3
(-3)
A 		96.7
(3)
P 		91.5
(2.4)
P 		54
avr 78.1
(1.4) 		71.8
(0.6) 		44.2
(-3) 		43.9
(-3) 		90.3
(3) 		88.8
(2.8) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183707_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.480
Sequence Type Exemplar sequence
Representative Public ID ZK973.9 NCBI
Target Description ZK973.9 /REP_DB=WormBase Gene ID /WP=CE23479 /TR=Q9N4L9 /GB=AAF40004.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058957 NCBI Caenorhabditis elegans ZK973.9 (ZK973.9) mRNA, complete cds. 11/11 None
SNAP00000023511 ENSEMBL cdna:SNAP chromosome:CEL140:I:4370604:4372139:-1 11/11 None
GENEFINDER00000023521 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4370604:4372139:-1 11/11 None
ZK973.9 ENSEMBL cdna:known chromosome:CEL140:I:4370443:4372137:-1 gene:ZK973.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4370603-4372112(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK973.9
Entrez Gene 172036 Entrez gene
SwissProt Q9N4L9 EMBL-EBI
WormBase CE23479 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
7601 visual perception inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF40004 Hypothetical protein ZK973.9 [Caenorhabditis elegans] ref|NP_491358.1| ZK973.9 [Caenorhabditis elegans] 3.0E-30
blast CAE66825 Hypothetical protein CBG12192 [Caenorhabditis briggsae] emb|CAE56282.1| Hypothetical protein CBG23931 [Caenorhabditis briggsae] 2.0E-20
blast CAE66825 Hypothetical protein CBG12192 [Caenorhabditis briggsae] emb|CAE56282.1| Hypothetical protein CBG23931 [Caenorhabditis briggsae] 1.0E-15
Protein Domains
Database ID Description E-Value
scop a.4.5.SCF ubiquitin ligase complex WHB domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; SCF ubiquitin ligase complex WHB domain 1.0
scop a.4.5.SCF ubiquitin ligase complex WHB domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; SCF ubiquitin ligase complex WHB domain 1.20000004768372
Pfam IPR007726 EMBL-EBI SSXT 2.3E-46
Pfam IPR007726 EMBL-EBI SSXT 2.3E-46
Sequence
Target Sequence 
>C. ELEGANS:183707_S_AT
tcagagccgtgctgacgaagccatcaaacaccaacaacttttacatcggaacttgttaca
tctttcaaatctcgcagacccattccttctaagccagctgaaagatgatggtaccgctgc
tgccgctcttccagatcctaaccaacaacagcctcaacccggagcttctggtcctccggc
accacatctccaacaacaacaaccacaacattcaccacaacaaggccatccacatcctca
acaaggacttcctgccgctcaccatcgtcaacaaatgatgccaccacaggcggcaccaag
tccaggtggtccaatgcagccgcctcacggatttgctcctccgccaatgggtggtggtgt
accacccgagatgatgaatcatcaagcttatcaagcacaaatgcggcagcagcaacaaca
gcctaatggacaagctccgccacctgtgtatccaccgtttggacagccagcaccgcagat
gagtggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGAGCCGTGCTGACGAAGCCATC 499 623 105 Antisense
CCATTCCTTCTAAGCCAGCTGAAAG 409 269 184 Antisense
GAAAGATGATGGTACCGCTGCTGCC 67 361 204 Antisense
TTCCAGATCCTAACCAACAACAGCC 664 699 233 Antisense
ACATCCTCAACAAGGACTTCCTGCC 240 105 336 Antisense
CAAATGATGCCACCACAGGCGGCAC 293 193 376 Antisense
CAAGTCCAGGTGGTCCAATGCAGCC 97 185 401 Antisense
TCCTCCGCCAATGGGTGGTGGTGTA 351 591 441 Antisense
GGTGTACCACCCGAGATGATGAATC 503 499 460 Antisense
TGTATCCACCGTTTGGACAGCCAGC 70 561 551 Antisense
CAGCCAGCACCGCAGATGAGTGGAC 205 203 568 Antisense
Sequence Source Affymetrix Proprietary Database