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[183706_at]

Description T20F5.5 /REP_DB=WormBase Gene ID /WP=CE13824 /TR=P91481 /GB=AAB37667.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 44      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 20.4
(-1.8)
A 		56.3
(3)
A 		33.7
(-0)
A 		11.8
(-3)
A 		45
B 51.6
(3)
A 		14.8
(-2.5)
A 		11.6
(-3)
A 		24.2
(-1.1)
A 		40
C 3.4
(-3)
A 		36.3
(3)
A 		11.3
(-1.6)
A 		9.8
(-1.8)
A 		33
avr 25.1
(-0.1) 		35.8
(3) 		18.9
(-1.9) 		15.3
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 14.7
(-2.3)
A 		14.1
(-2.4)
A 		3.7
(-3)
A 		7.8
(-2.7)
A 		89.8
(2.3)
A 		101.6
(3)
A 		98
B 11.1
(-2.8)
A 		40.6
(-0.1)
A 		9.2
(-3)
A 		9.2
(-3)
A 		75.3
(3)
A 		67.8
(2.3)
A 		66
C 11.7
(-2.7)
A 		9.4
(-2.9)
A 		7.6
(-3)
A 		12.3
(-2.7)
A 		78.8
(2.2)
A 		89.3
(3)
A 		82
avr 12.5
(-2.6) 		21.4
(-1.9) 		6.8
(-3) 		9.8
(-2.8) 		81.3
(2.6) 		86.2
(3) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.4
(0.3)
A 		12.2
(3)
A 		8.8
(1.1)
A 		1.7
(-3)
A 		11
B 16.4
(3)
A 		3.7
(-2.6)
A 		2.7
(-3)
A 		5.2
(-1.9)
A 		14
C 1.1
(-3)
A 		10.4
(3)
A 		4
(-1.1)
A 		1.7
(-2.6)
A 		9
avr 8.3
(2.5) 		8.8
(3) 		5.2
(-0.7) 		2.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.7
(-2.6)
A 		5
(-2)
A 		0.8
(-3)
A 		2
(-2.7)
A 		27.1
(3)
A 		24.7
(2.5)
A 		26
B 3.9
(-2.6)
A 		13.5
(-0.6)
A 		2.2
(-3)
A 		2.4
(-3)
A 		30.6
(3)
A 		25.3
(1.9)
A 		28
C 4.3
(-2.5)
A 		2.9
(-2.8)
A 		1.9
(-3)
A 		2.5
(-2.9)
A 		25.5
(2.1)
A 		29.9
(3)
A 		28
avr 3.6
(-2.5) 		7.1
(-1.7) 		1.6
(-3) 		2.3
(-2.8) 		27.7
(3) 		26.6
(2.7) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.146
Sequence Type Exemplar sequence
Representative Public ID T20F5.5 NCBI
Target Description T20F5.5 /REP_DB=WormBase Gene ID /WP=CE13824 /TR=P91481 /GB=AAB37667.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058864 NCBI Caenorhabditis elegans T20F5.5 (T20F5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000034159 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3912544:3919609:-1 11/11 None
SNAP00000034151 ENSEMBL cdna:SNAP chromosome:CEL140:I:3917947:3920174:-1 11/11 None
T20F5.5 ENSEMBL cdna:known chromosome:CEL140:I:3918438:3919175:-1 gene:T20F5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3918437-3919175(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20F5.5
Entrez Gene 188656 Entrez gene
SwissProt P91481 EMBL-EBI
WormBase CE13824 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37665 Hypothetical protein T20F5.4 [Caenorhabditis elegans] ref|NP_491263.1| T20F5.4 [Caenorhabditis elegans] 1.0E-154
blast CAE66698 Hypothetical protein CBG12041 [Caenorhabditis briggsae] 1.0E-135
blast AAB37667 Hypothetical protein T20F5.5 [Caenorhabditis elegans] ref|NP_491265.1| T20F5.5 [Caenorhabditis elegans] 2.0E-89
blast AAB37667 Hypothetical protein T20F5.5 [Caenorhabditis elegans] ref|NP_491265.1| T20F5.5 [Caenorhabditis elegans] 1.0E-88
blast AAB37667 Hypothetical protein T20F5.5 [Caenorhabditis elegans] ref|NP_491265.1| T20F5.5 [Caenorhabditis elegans] 4.0E-88
blast CAE66699 Hypothetical protein CBG12042 [Caenorhabditis briggsae] 1.0E-66
blast CAE66699 Hypothetical protein CBG12042 [Caenorhabditis briggsae] 6.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034159 1 36-58
SNAP00000034151 1 40-62
Sequence
Target Sequence 
>C. ELEGANS:183706_AT
cagtccatcgtaatccagccgaataatgcgaaacctgtcagtaagccgggcaaaagtgac
aagtcaaaagtttcatctggatatgagaaagatgttcttccatcgaagtctatgaaaatg
aaagtttccatttcgcctgataaatctgcttccaagaagttgcgtgttccatctaaagag
tctgaagacactcagccaaccaagtcagatgcatcccaaactgaaaagtcaacaaagaag
cctccagtgactcttgttgaatcttcggccgatgtgactaccgccgttgaatcgatttcc
tcacaacaacaactcgctccagctgctccagtggctcctccgcaactcactcaagcttct
ccggctcctgttgctccagccgtattagtcccggaaaaggagaagactgcagacaagtct
caatcgaatgattcatcaatgacctcgtttacggtaccagaagaagccacattcaatcgt
tcaaagagccaaagtactgcaccaaaagagcccactccagctactccaactgctactact
ctctccggaacttcatatgtcagcactacaggaactccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTCCATCGTAATCCAGCCGAATA 591 207 67 Antisense
GCGAAACCTGTCAGTAAGCCGGGCA 301 287 94 Antisense
TTTCGCCTGATAAATCTGCTTCCAA 209 671 197 Antisense
GACACTCAGCCAACCAAGTCAGATG 147 367 253 Antisense
AGTGACTCTTGTTGAATCTTCGGCC 129 61 312 Antisense
AATCTTCGGCCGATGTGACTACCGC 547 169 326 Antisense
GACTACCGCCGTTGAATCGATTTCC 684 371 342 Antisense
AATCGATTTCCTCACAACAACAACT 265 167 356 Antisense
CAATGACCTCGTTTACGGTACCAGA 289 181 503 Antisense
TACTCTCTCCGGAACTTCATATGTC 679 645 603 Antisense
ATGTCAGCACTACAGGAACTCCGGA 224 47 623 Antisense
Sequence Source Affymetrix Proprietary Database