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[183705_at]

Description K10D11.4 /REP_DB=WormBase Gene ID /WP=CE16241 /TR=O17947 /GB=CAB03523.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 58      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 44.6
(3)
A 		22.3
(-2.1)
A 		24.6
(-1.6)
A 		18.3
(-3)
A 		26
B 0.8
(-3)
A 		50.8
(3)
A 		38.7
(1.5)
A 		13.5
(-1.5)
A 		50
C 7.3
(-3)
A 		13.1
(-0.8)
A 		23.1
(3)
A 		7.6
(-2.9)
A 		16
avr 17.6
(-1.3) 		28.7
(3) 		28.8
(3) 		13.1
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.2
(-2.4)
A 		9.8
(-0.1)
A 		3.9
(-3)
A 		14.4
(2.2)
A 		16.1
(3)
A 		15.3
(2.6)
A 		12
B 2.9
(-2.9)
A 		10.9
(-1.6)
A 		13.5
(-1.1)
A 		17.3
(-0.5)
A 		38.6
(3)
A 		2.3
(-3)
A 		36
C 24.1
(1)
M 		33.5
(3)
A 		6.4
(-2.8)
A 		5.4
(-3)
A 		10.7
(-1.9)
A 		17.1
(-0.5)
A 		28
avr 10.7
(-1.8) 		18.1
(1.4) 		7.9
(-3) 		12.4
(-1.1) 		21.8
(3) 		11.6
(-1.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.2
(3)
A 		4.8
(-2.1)
A 		6.4
(-1.4)
A 		2.7
(-3)
A 		14
B 0.3
(-3)
A 		12.6
(3)
A 		9
(1.2)
A 		2.9
(-1.7)
A 		12
C 2.4
(-2)
A 		3.8
(-0.8)
A 		8.1
(3)
A 		1.3
(-3)
A 		7
avr 6.3
(1.4) 		7.1
(2.2) 		7.8
(3) 		2.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1
(-2.7)
A 		3.5
(1)
A 		0.8
(-3)
A 		3.7
(1.2)
A 		4.9
(3)
A 		3.7
(1.2)
A 		4
B 1
(-3)
A 		3.6
(-1.9)
A 		3.3
(-2)
A 		4.6
(-1.5)
A 		15.7
(3)
A 		0.9
(-3)
A 		15
C 8.9
(2.1)
M 		10.2
(3)
A 		1.6
(-2.7)
A 		1.1
(-3)
A 		3.5
(-1.4)
A 		5.7
(0)
A 		9
avr 3.6
(-1.3) 		5.8
(0.8) 		1.9
(-3) 		3.1
(-1.8) 		8
(3) 		3.4
(-1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10333
Sequence Type Exemplar sequence
Representative Public ID K10D11.4 NCBI
Target Description K10D11.4 /REP_DB=WormBase Gene ID /WP=CE16241 /TR=O17947 /GB=CAB03523.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070090(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070090 NCBI Caenorhabditis elegans K10D11.4 (K10D11.4) mRNA, complete cds. 11/11 None
K10D11.4 ENSEMBL cdna:known chromosome:CEL140:IV:12992127:12994843:-1 gene:K10D11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011399 6/11 Cross Hyb Matching Probes None
GENEFINDER00000011402 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12992132-12994849(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D11.4
Entrez Gene 187269 Entrez gene
SwissProt O17947 EMBL-EBI
WormBase CE16241 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03523 Hypothetical protein K10D11.4 [Caenorhabditis elegans] ref|NP_502491.1| K10D11.4 [Caenorhabditis elegans] 0.0
blast CAE56629 Hypothetical protein CBG24385 [Caenorhabditis briggsae] 1.0E-177
blast CAB03525 Hypothetical protein K10D11.6 [Caenorhabditis elegans] ref|NP_502489.1| K10D11.6 [Caenorhabditis elegans] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.5E-29
Sequence
Target Sequence 
>C. ELEGANS:183705_AT
gacaaaggtgccgagcttcaagtatattttgaagggctcaaagaaactcaaaaagttgca
acctatacaagcaaaaataatggaactaacttgccacaaaaacttcaaggtagcatcagg
tattatatgttgacttctgggaaagcttctttgtcattgactagagacaaagggaagtcc
aactgggaacatgcatttgcgggaagaaaaggatttctgacatcaaagtactggaagaat
gataaccctgaattggagcaggattcgtttcatttcatcggtgtggagactaaaaattca
actctgtacaagtttctctatcgagttttggaggcggatttggctggtgataatagtgtt
cacttggtggtagctgataatgctcagaggatactctattacgatcaccgaagtgcaacc
gagtacacaaacgatactgaatggcattcacattatggtcattcgatttcactggtttat
tcttcaaatactgccgtgtcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAAGGTGCCGAGCTTCAAGTAT 709 365 1105 Antisense
GGAAAGCTTCTTTGTCATTGACTAG 654 527 1244 Antisense
ATTGGAGCAGGATTCGTTTCATTTC 166 3 1356 Antisense
GTTTCATTTCATCGGTGTGGAGACT 15 449 1371 Antisense
TCTGTACAAGTTTCTCTATCGAGTT 295 609 1407 Antisense
GGAGGCGGATTTGGCTGGTGATAAT 523 513 1434 Antisense
GAGGATACTCTATTACGATCACCGA 468 403 1491 Antisense
CGATCACCGAAGTGCAACCGAGTAC 167 247 1506 Antisense
ATGGCATTCACATTATGGTCATTCG 303 53 1545 Antisense
GGTCATTCGATTTCACTGGTTTATT 599 503 1561 Antisense
ATTCTTCAAATACTGCCGTGTCAAA 347 11 1583 Antisense
Sequence Source Affymetrix Proprietary Database