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[183704_at]

Description T20F5.7 /REP_DB=WormBase Gene ID /WP=CE13828 /TR=P91483 /GB=AAB37669.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 49      4grp_high_8_8 > 42      6grp_highest_nonorm > 91      6grp_total > 69      4grp_total > 45      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 205.3
(1)
P 		228.2
(3)
P 		159.5
(-3)
P 		183
(-0.9)
P 		69
B 253.6
(3)
P 		161.3
(-3)
P 		208.6
(0.1)
P 		208.9
(0.1)
P 		92
C 191.7
(1.5)
P 		206
(3)
P 		196.8
(2)
P 		148.4
(-3)
P 		58
avr 216.9
(3) 		198.5
(0) 		188.3
(-1.7) 		180.1
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 189.5
(-1.1)
P 		165.3
(-2)
P 		138.8
(-3)
P 		173.1
(-1.7)
P 		221.6
(0.1)
P 		297.8
(3)
P 		159
B 213.2
(-1.2)
P 		155.5
(-2.8)
P 		148.6
(-3)
P 		161.9
(-2.6)
P 		230.2
(-0.8)
P 		367.3
(3)
P 		219
C 212
(-0.9)
P 		177.6
(-2.1)
P 		158.7
(-2.8)
P 		153.6
(-3)
P 		246.5
(0.3)
P 		320.1
(3)
P 		167
avr 204.9
(-1.1) 		166.1
(-2.4) 		148.7
(-3) 		162.9
(-2.5) 		232.8
(-0.2) 		328.4
(3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 74.7
(3)
P 		49.5
(-0.2)
P 		41.7
(-1.1)
P 		26.8
(-3)
P 		48
B 80.9
(3)
P 		39.8
(-3)
P 		48.3
(-1.8)
P 		44.5
(-2.3)
P 		41
C 63.5
(2.3)
P 		59.2
(1.7)
P 		68.6
(3)
P 		25
(-3)
P 		44
avr 73
(3) 		49.5
(-0.4) 		52.9
(0.1) 		32.1
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 34.9
(-2.3)
P 		58.8
(1.1)
P 		30.2
(-3)
P 		43.9
(-1.1)
P 		66.9
(2.2)
P 		72.5
(3)
P 		42
B 74.2
(-0.7)
P 		51.8
(-2.1)
P 		36.1
(-3)
P 		42.9
(-2.6)
P 		93.5
(0.4)
P 		137
(3)
P 		101
C 78.6
(0.8)
P 		54.2
(-1.2)
P 		40.4
(-2.3)
P 		30.9
(-3)
P 		79.8
(0.8)
P 		107.2
(3)
P 		76
avr 62.6
(-0.7) 		54.9
(-1.3) 		35.6
(-3) 		39.2
(-2.7) 		80.1
(0.8) 		105.6
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183704_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.75
Sequence Type Exemplar sequence
Representative Public ID T20F5.7 NCBI
Target Description T20F5.7 /REP_DB=WormBase Gene ID /WP=CE13828 /TR=P91483 /GB=AAB37669.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058866 NCBI Caenorhabditis elegans T20F5.7 (T20F5.7) mRNA, complete cds. 11/11 None
GENEFINDER00000034154 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3925620:3927883:-1 11/11 None
SNAP00000034153 ENSEMBL cdna:SNAP chromosome:CEL140:I:3925839:3927883:-1 11/11 None
T20F5.7 ENSEMBL cdna:known chromosome:CEL140:I:3925463:3927889:-1 gene:T20F5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3925838-3927883(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20F5.7
Entrez Gene 171979 Entrez gene
SwissProt P91483 EMBL-EBI
WormBase CE13828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37669 Hypothetical protein T20F5.7 [Caenorhabditis elegans] ref|NP_491267.1| T20F5.7 [Caenorhabditis elegans] 1.0E-154
blast AAB37669 Hypothetical protein T20F5.7 [Caenorhabditis elegans] ref|NP_491267.1| T20F5.7 [Caenorhabditis elegans] 1.0E-152
blast CAE66702 Hypothetical protein CBG12047 [Caenorhabditis briggsae] 5.0E-67
blast CAE66702 Hypothetical protein CBG12047 [Caenorhabditis briggsae] 2.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.5E-5
Sequence
Target Sequence 
>C. ELEGANS:183704_AT
aagtgctcactctcaaaatggctcgaagtaaccgaatggagattcatgttgcatcgaaaa
aagatcttgaaggacctgaattgtatcttcgtaaggattccgaaggaaatactcatattg
ttgttgctggactgacgggatcaccagcagaagttatgaagtttattactgaaaatggaa
ttagtattgagacgggagttctgatgccacaagttgtgtatgatgagggtcgcacacgtg
gcgggactgaaaagtttgcgaaggttaacagcatggcagctggtcaatctgctatcaagt
gcacaaagccaccggttaaactcgaagagctggagtttcataagacatttgagctgaaag
taagcgaggaatctggatcacttaagatggagctggtgcagaaagaagaagttccgaaga
atggatttggagtgttcgaaggatgtatgacaaaaccatctgcaaaacgtctcaaagagt
ttaccgacagttgtccaggcacttcagccgaagatgaagtccaagttatcgagccggagc
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGCTCACTCTCAAAATGGCTCG 256 159 326 Antisense
GTTGTTGCTGGACTGACGGGATCAC 96 439 445 Antisense
GACGGGATCACCAGCAGAAGTTATG 501 375 459 Antisense
ACGGGAGTTCTGATGCCACAAGTTG 410 95 517 Antisense
GTATGATGAGGGTCGCACACGTGGC 583 453 543 Antisense
GCATGGCAGCTGGTCAATCTGCTAT 349 311 596 Antisense
ATCAAGTGCACAAAGCCACCGGTTA 293 27 619 Antisense
GCCACCGGTTAAACTCGAAGAGCTG 570 277 633 Antisense
GTTTACCGACAGTTGTCCAGGCACT 106 447 804 Antisense
GTCCAGGCACTTCAGCCGAAGATGA 49 477 818 Antisense
AAGTCCAAGTTATCGAGCCGGAGCC 285 159 842 Antisense
Sequence Source Affymetrix Proprietary Database