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[183703_s_at] UDP-glucoronosyl and UDP-glucosyl transferases /// ---

Description Y43D4A.2 /REP_DB=WormBase Gene ID /WP=CE21875 /TR=Q9NF29 /GB=CAB60343.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 62      6grp_total > 43      4grp_total > 59      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1304
1 2 3 4 range
A 911.9
(1.4)
P 		1122.7
(3)
P 		1029
(2.3)
P 		331.9
(-3)
P 		791
B 911.4
(0)
P 		1435
(2.8)
P 		1463.3
(3)
P 		353.4
(-3)
P 		1110
C 1132.7
(0.5)
P 		1465.5
(2.2)
P 		1635.6
(3)
P 		434.3
(-3)
P 		1201
avr 985.3
(0.7) 		1341.1
(2.8) 		1376
(3) 		373.2
(-3) 		1003

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 573
1 2 3 4 5 6 range
A 260.2
(-2.4)
P 		779.9
(3)
P 		682.5
(2)
P 		502.8
(0.1)
P 		354.5
(-1.5)
P 		207.4
(-3)
P 		573
B 505.3
(1.7)
P 		344.7
(-2.3)
P 		555.8
(3)
P 		385.3
(-1.3)
P 		319
(-3)
P 		359.9
(-2)
P 		237
C 564.9
(0.8)
P 		417.4
(-1.6)
P 		698.2
(3)
P 		333.8
(-3)
P 		366.2
(-2.5)
P 		399.1
(-1.9)
P 		364
avr 443.5
(-0.7) 		514
(0.6) 		645.5
(3) 		407.3
(-1.4) 		346.6
(-2.5) 		322.1
(-3) 		323
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 522
1 2 3 4 range
A 332
(3)
P 		243.7
(1.1)
P 		269
(1.7)
P 		48.6
(-3)
P 		283
B 290.6
(1.6)
P 		354.4
(3)
P 		339.1
(2.7)
P 		75.3
(-3)
P 		279
C 375
(0.6)
P 		421.3
(1.2)
P 		570.1
(3)
P 		73.2
(-3)
P 		497
avr 332.5
(1.9) 		339.8
(2) 		392.7
(3) 		65.7
(-3) 		327

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 48
(-3)
P 		277.4
(3)
P 		148.6
(-0.4)
P 		127.5
(-0.9)
P 		107
(-1.5)
P 		50.5
(-2.9)
P 		229
B 175.8
(3)
P 		114.7
(-2)
P 		135
(-0.3)
P 		102.1
(-3)
P 		129.6
(-0.8)
P 		134.2
(-0.4)
P 		74
C 209.4
(3)
P 		127.4
(-0.5)
P 		177.7
(1.7)
P 		67.1
(-3)
P 		118.5
(-0.8)
P 		133.6
(-0.2)
P 		142
avr 144.4
(0.7) 		173.2
(3) 		153.8
(1.4) 		98.9
(-3) 		118.4
(-1.4) 		106.1
(-2.4) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183703_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9172
Sequence Type Exemplar sequence
Representative Public ID Y43D4A.2 NCBI
Target Description Y43D4A.2 /REP_DB=WormBase Gene ID /WP=CE21875 /TR=Q9NF29 /GB=CAB60343.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070583(11), NM_070232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070583 NCBI Caenorhabditis elegans Y43D4A.2 (Y43D4A.2) mRNA, complete cds. 11/11 None
NM_070232 NCBI Caenorhabditis elegans C08F11.8 (C08F11.8) mRNA, complete cds. 11/11 A 
SNAP00000037217 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16744654:16746103:-1 11/11 None
GENEFINDER00000037228 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16744614:16746103:-1 11/11 None
SNAP00000042602 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13640406:13644011:1 11/11 None
GENEFINDER00000042607 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13639319:13644011:1 11/11 None
C08F11.8 ENSEMBL cdna:known chromosome:CEL140:IV:13639235:13644354:1 gene:C08F11.8 11/11 A 
Y43D4A.2 ENSEMBL cdna:known chromosome:CEL140:IV:16744614:16746103:-1 gene:Y43D4A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13640741-13739770(+) 92.76 92.76
chrIV:16744619-16746109(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucoronosyl and UDP-glucosyl transferases

Gene Symbol ugt-22
Ensembl C08F11.8
Y43D4A.2
Entrez Gene 178330 Entrez gene
189851 Entrez gene
SwissProt Q9U3Q6 EMBL-EBI
Q9NF29 EMBL-EBI
WormBase CE17385 Wormbase
CE21875 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1628950_AT dm
DROSGENOME1:146437_AT dm
HG-U133_PLUS_2:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-FOCUS:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U133A:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U133A_2:208596_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U133_PLUS_2:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U133A:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-FOCUS:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U133A_2:207126_X_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U133_PLUS_2:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U133A_2:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-FOCUS:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U133A:215125_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HU35KSUBC:RC_AA085987_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HUGENEFL:J04093_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U133A:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U133_PLUS_2:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U133A_2:204532_X_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
U133_X3P:G13487899_3P_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
U133_X3P:HS.2056.1.S1_3P_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
HG-U95AV2:32392_S_AT UDP glucuronosyltransferase 1 family, polypeptide A1 hs
RT-U34:D83796_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
RG-U34A:D83796_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
RT-U34:J05132_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
RG-U34A:J05132_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
RT-U34:J02612MRNA_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
RG-U34A:J02612MRNA_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
RG-U34A:D38065EXON_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
RG-U34A:S56937_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
RAE230A:1370613_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
RAT230_2:1370613_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
RAE230A:1387759_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
RAT230_2:1387759_S_AT UDP glycosyltransferase 1 family, polypeptide A1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB62783 Hypothetical protein C08F11.8 [Caenorhabditis elegans] ref|NP_502633.1| C08F11.8 [Caenorhabditis elegans] 0.0
blast CAE74033 Hypothetical protein CBG21683 [Caenorhabditis briggsae] 0.0
blast AAC68980 Udp-glucuronosyltransferase protein 20 [Caenorhabditis elegans] ref|NP_500913.1| K08B4.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.1E-42
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.7E-13
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.0E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502633.1 1 496-518
C08F11.8 1 496-518
SNAP00000042602 1 438-460
GENEFINDER00000042607 1 496-518
Sequence
Target Sequence 
>C. ELEGANS:183703_S_AT
cattttcgcttcccagtgcagaaaagttttggaggataaggagcttattgagaggttgag
agcagagaattttgacctggcaatcacagaaccatttgatacgtgtgcaaatgccctctt
cgaagccattaaaatccgtgctcacgtggcagttctctcttgcagtcgccttgatcatgt
ttcaaaagcaattggtcaaccaatcgccccaagttatttacctggaactcaatcaactca
tggagaaagaatgacaatttggcaaagatttatgaatattcttcattttttgatgggaga
tttcttgttcagttatattggagatgaagatttcaaggtggcaaaggaaattattccggg
agtcagatcgtggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTTCGCTTCCCAGTGCAGAAAA 700 215 21 Antisense
CGCTTCCCAGTGCAGAAAAGTTTTG 633 253 27 Antisense
TAAGGAGCTTATTGAGAGGTTGAGA 409 637 57 Antisense
GACCTGGCAATCACAGAACCATTTG 191 383 94 Antisense
CACAGAACCATTTGATACGTGTGCA 296 193 105 Antisense
ATGCCCTCTTCGAAGCCATTAAAAT 281 39 131 Antisense
GAAGCCATTAAAATCCGTGCTCACG 611 343 142 Antisense
AAATCCGTGCTCACGTGGCAGTTCT 258 119 152 Antisense
GCAATTGGTCAACCAATCGCCCCAA 581 323 208 Antisense
GAGATTTCTTGTTCAGTTATATTGG 675 395 317 Antisense
TATTCCGGGAGTCAGATCGTGGAGA 452 661 372 Antisense
Sequence Source Affymetrix Proprietary Database