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[183701_s_at] --- /// protein-tyrosine phosphatase

Description F20B6.6 /REP_DB=WormBase Gene ID /WP=CE04428 /TR=Q19630 /GB=AAA82314.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 11.4
(-3)
A 		32.5
(2)
A 		32.2
(2)
A 		36.5
(3)
A 		25
B 3.9
(-2.6)
A 		35.3
(3)
A 		3.6
(-2.7)
A 		1.7
(-3)
A 		34
C 29.8
(-0.9)
A 		18.2
(-2)
A 		6.4
(-3)
A 		74
(3)
A 		68
avr 15
(-2.8) 		28.7
(0.8) 		14.1
(-3) 		37.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 44.8
(0.4)
A 		11.1
(-3)
A 		69.8
(3)
A 		29.6
(-1.1)
A 		44.5
(0.4)
A 		62.3
(2.2)
A 		59
B 24.9
(-0.4)
A 		21.1
(-1.4)
A 		37.4
(3)
A 		15.2
(-3)
A 		30.6
(1.2)
A 		33.1
(1.8)
A 		22
C 16
(-3)
A 		49.1
(1.4)
A 		26.3
(-1.6)
A 		45.9
(0.9)
A 		48.3
(1.3)
A 		61.5
(3)
A 		46
avr 28.6
(-2.6) 		27.1
(-3) 		44.5
(1.1) 		30.2
(-2.3) 		41.1
(0.3) 		52.3
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.1
(-3)
A 		7.1
(1.2)
A 		8.4
(3)
A 		5.3
(-1.3)
A 		4
B 1.2
(-2.4)
A 		8.7
(3)
A 		0.8
(-2.7)
A 		0.4
(-3)
A 		8
C 9.9
(1.5)
A 		5.2
(-1.3)
A 		2.2
(-3)
A 		12.5
(3)
A 		10
avr 5.1
(-0.6) 		7
(3) 		3.8
(-3) 		6.1
(1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.3
(-0.7)
A 		4
(-3)
A 		15.2
(3)
A 		7.5
(-1.1)
A 		13.4
(2)
A 		15.2
(3)
A 		11
B 8.7
(0.4)
A 		7
(-0.9)
A 		9.1
(0.6)
A 		4
(-3)
A 		12.4
(3)
A 		12.3
(2.9)
A 		8
C 5.9
(-3)
A 		15
(0.7)
A 		6.7
(-2.7)
A 		9.2
(-1.7)
A 		15.6
(1)
A 		20.6
(3)
A 		15
avr 7.6
(-2.5) 		8.7
(-1.8) 		10.3
(-0.8) 		6.9
(-3) 		13.8
(1.5) 		16
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183701_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16002
Sequence Type Exemplar sequence
Representative Public ID F20B6.6 NCBI
Target Description F20B6.6 /REP_DB=WormBase Gene ID /WP=CE04428 /TR=Q19630 /GB=AAA82314.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058670(11), NM_076314(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058670 NCBI Caenorhabditis elegans Y71F9AL.4 (Y71F9AL.4) mRNA, complete cds. 11/11 A 
NM_076314 NCBI Caenorhabditis elegans F20B6.6 (F20B6.6) mRNA, complete cds. 11/11 None
SNAP00000005893 ENSEMBL cdna:SNAP chromosome:CEL140:I:2890831:2907710:1 11/11 None
GENEFINDER00000005900 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2903460:2907710:1 11/11 None
SNAP00000010537 ENSEMBL cdna:SNAP chromosome:CEL140:X:4200403:4202188:-1 11/11 None
GENEFINDER00000010542 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4201715:4207007:-1 10/11 None
Y71F9AL.4 ENSEMBL cdna:known chromosome:CEL140:I:2903597:2907715:1 gene:Y71F9AL.4 11/11 A 
F20B6.6 ENSEMBL cdna:known chromosome:CEL140:X:4201624:4202188:-1 gene:F20B6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2905034-2905562(+) 90.64 90.64
chrX:4201624-4202189(-) 91.1 100.0
Public Domain and Genome References
Gene Title
protein-tyrosine phosphatase
Ensembl Y71F9AL.4
F20B6.6
Entrez Gene 171861 Entrez gene
184714 Entrez gene
SwissProt Q19630 EMBL-EBI
Q9N4H5 EMBL-EBI
WormBase CE04428 Wormbase
CE25558 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36005 Hypothetical protein Y71F9AL.4 [Caenorhabditis elegans] ref|NP_491071.1| Y71F9AL.4 [Caenorhabditis elegans] 0.0
blast AAF36004 Glutathione s-transferase protein 43 [Caenorhabditis elegans] ref|NP_491070.1| Glutathione S-Transferase family member (gst-43) [Caenorhabditis elegans] 1.0E-83
blast AAA82314 Hypothetical protein F20B6.6 [Caenorhabditis elegans] ref|NP_508715.1| F20B6.6 [Caenorhabditis elegans] 3.0E-68
blast AAA82310 Hypothetical protein F20B6.1 [Caenorhabditis elegans] ref|NP_508714.1| F20B6.1 [Caenorhabditis elegans] 8.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.5E-71
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 8.4E-6
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 8.8E-17
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.5E-71
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.5E-71
Sequence
Target Sequence 
>C. ELEGANS:183701_S_AT
ggaaagccaaaaccgtcgcatgagaaggatgccaaggtgaagaagaacgacgatgatgat
gatttgggcagtgagaagaaggatttggagccgaaagagaaagagcaacgtgcggaaatg
atcaaaaagtgggcttctgcggtgatgatgagcactccacagcaactgacgaaagagtac
aaagccgtcggaaatatttttcccgactcggaatgtacggcgtttctaaagttcaaggat
ctcaaccgctatccgaacattcaatgttgggatcgcggccgcttcacacttgccggcgat
gaaaacttctacattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAGCCAAAACCGTCGCATGAGA 85 527 58 Antisense
AAAAGTGGGCTTCTGCGGTGATGAT 68 133 182 Antisense
GCGGTGATGATGAGCACTCCACAGC 510 293 196 Antisense
AGCACTCCACAGCAACTGACGAAAG 511 75 208 Antisense
GAAAGAGTACAAAGCCGTCGGAAAT 253 355 228 Antisense
CGACTCGGAATGTACGGCGTTTCTA 650 251 261 Antisense
TGTACGGCGTTTCTAAAGTTCAAGG 77 1 271 Antisense
AAGTTCAAGGATCTCAACCGCTATC 647 155 286 Antisense
TCTCAACCGCTATCCGAACATTCAA 110 613 297 Antisense
ACATTCAATGTTGGGATCGCGGCCG 374 105 314 Antisense
GCCGGCGATGAAAACTTCTACATTC 491 283 349 Antisense
Sequence Source Affymetrix Proprietary Database