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[183699_at]

Description B0281.2 /REP_DB=WormBase Gene ID /WP=CE07713 /TR=O16615 /GB=AAB66081.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 106.4
(1.1)
A 		32.1
(-3)
A 		108
(1.2)
A 		140.8
(3)
A 		109
B 126.9
(2.1)
A 		137.9
(3)
A 		61.1
(-3)
A 		100.3
(0.1)
A 		77
C 130.2
(3)
A 		108.4
(-2)
A 		103.9
(-3)
A 		123.6
(1.5)
A 		26
avr 121.2
(2.9) 		92.8
(-2.6) 		91
(-3) 		121.6
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 45.8
(-1.3)
A 		111.7
(3)
A 		95.6
(2)
A 		82.7
(1.1)
A 		57.7
(-0.5)
A 		19.5
(-3)
A 		92
B 135.2
(3)
A 		45.7
(-2.4)
A 		34.9
(-3)
A 		68.9
(-1)
A 		65.5
(-1.2)
A 		75.6
(-0.6)
A 		100
C 100
(3)
A 		77.4
(0.4)
A 		48.7
(-2.9)
A 		47.9
(-3)
A 		87
(1.5)
A 		66.4
(-0.9)
A 		52
avr 93.7
(3) 		78.3
(0.7) 		59.7
(-2.1) 		66.5
(-1.1) 		70.1
(-0.5) 		53.8
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 38.8
(3)
A 		7
(-3)
A 		28.2
(1)
A 		20.6
(-0.4)
A 		32
B 40.5
(3)
A 		34
(1.5)
A 		14.2
(-3)
A 		21.4
(-1.4)
A 		26
C 43.1
(3)
A 		31.2
(-0.2)
A 		36.2
(1.1)
A 		20.8
(-3)
A 		22
avr 40.8
(3) 		24.1
(-2) 		26.2
(-1.4) 		20.9
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 8.4
(-2.4)
A 		39.7
(3)
A 		20.8
(-0.2)
A 		21
(-0.2)
A 		17.4
(-0.8)
A 		4.7
(-3)
A 		35
B 47.1
(3)
A 		15.2
(-2)
A 		8.5
(-3)
A 		18.2
(-1.5)
A 		26.6
(-0.2)
A 		28.2
(0.1)
A 		39
C 37.1
(3)
A 		23.6
(0.1)
A 		12.4
(-2.4)
A 		9.6
(-3)
A 		28.1
(1)
A 		22.2
(-0.3)
A 		28
avr 30.9
(3) 		26.2
(1.3) 		13.9
(-3) 		16.3
(-2.2) 		24
(0.6) 		18.4
(-1.4) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5846
Sequence Type Exemplar sequence
Representative Public ID B0281.2 NCBI
Target Description B0281.2 /REP_DB=WormBase Gene ID /WP=CE07713 /TR=O16615 /GB=AAB66081.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061832(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061832 NCBI Caenorhabditis elegans B0281.2 (B0281.2) mRNA, complete cds. 11/11 None
B0281.2 ENSEMBL cdna:known chromosome:CEL140:II:2308401:2309567:1 gene:B0281.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033222 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2308399-2309566(+) 37.7 100.0
Public Domain and Genome References
Ensembl B0281.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494233 B0281.2 [Caenorhabditis elegans] 0.0
blast T21231 hypothetical protein F22B3.3 - Caenorhabditis elegans 1.0E-110
blast T20051 hypothetical protein C49A1.8 - Caenorhabditis elegans 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 3.2E-29
Sequence
Target Sequence 
>C. ELEGANS:183699_AT
ttgccctactccgatctaaacaaatcctaaagtctttctcgtccacatctcctgaattct
atgtcaacctatataaattatacgtttcccctattttagaatactgctctgttgtatttt
ctcccccaccaaactctaaacttgcaaaaacgttagaatctccgctccagtattactcca
aacgagcactacaacgctgcaatataaaatacaattcaaaatctactgtaaacaatacct
caaattactcacaatcatatttaaatcgcatacaaatactaaatattcaaaccgcccgct
ctttgcgccttaaagcgcaacttctcctactatacaatattctaacaggaaccgcgtatt
ttccagacatcaatgactttgttgtgtttgttagctctaatcgtcgtcctatgctgttga
ttaaccgacacccaaaagttcgtaatttcttcagccaggttgtcccaatctggaattcaa
ttgttcacaactctcccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCCCTACTCCGATCTAAACAAAT 24 703 623 Antisense
GTCCACATCTCCTGAATTCTATGTC 650 477 663 Antisense
ATACTGCTCTGTTGTATTTTCTCCC 70 25 723 Antisense
AAAAACGTTAGAATCTCCGCTCCAG 649 129 768 Antisense
TCCGCTCCAGTATTACTCCAAACGA 35 595 783 Antisense
ATACTAAATATTCAAACCGCCCGCT 333 1 898 Antisense
TAAAGCGCAACTTCTCCTACTATAC 675 639 933 Antisense
GGAACCGCGTATTTTCCAGACATCA 205 529 970 Antisense
TCTAATCGTCGTCCTATGCTGTTGA 646 613 1018 Antisense
GTAATTTCTTCAGCCAGGTTGTCCC 575 451 1064 Antisense
TTCAATTGTTCACAACTCTCCCGAA 618 683 1098 Antisense
Sequence Source Affymetrix Proprietary Database