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[183698_at]

Description F59A3.3 /REP_DB=WormBase Gene ID /WP=CE11420 /TR=P91353 /GB=AAB37815.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 20      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 61      6grp_total > 31      4grp_total > 60      6grp_highest_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 410.2
(0.5)
P 		485.7
(2.2)
P 		524.6
(3)
P 		244.9
(-3)
P 		280
B 463.4
(2.6)
P 		371.9
(0.7)
P 		483.5
(3)
P 		191.3
(-3)
P 		292
C 428.5
(1.3)
P 		525
(2.8)
P 		540.2
(3)
P 		151.8
(-3)
P 		388
avr 434
(1.5) 		460.9
(2) 		516.1
(3) 		196
(-3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 417.7
(-0.5)
P 		463.6
(0.8)
P 		542.8
(3)
P 		420.9
(-0.5)
P 		354.3
(-2.3)
P 		331
(-3)
P 		212
B 488.4
(0.8)
P 		536.4
(2.5)
P 		551.8
(3)
P 		379.8
(-3)
P 		386.3
(-2.8)
P 		385.5
(-2.8)
P 		172
C 455.4
(0.5)
P 		576.2
(3)
P 		457
(0.6)
P 		570.4
(2.9)
P 		283.3
(-3)
P 		408.1
(-0.4)
P 		293
avr 453.8
(0.7) 		525.4
(3) 		517.2
(2.7) 		457
(0.8) 		341.3
(-3) 		374.9
(-1.9) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 149.4
(3)
P 		105.4
(0.7)
P 		137.1
(2.4)
P 		35.8
(-3)
P 		114
B 147.8
(3)
P 		91.9
(-0.1)
P 		112
(1)
P 		40.8
(-3)
P 		107
C 141.8
(1.3)
P 		150.9
(1.6)
P 		188.3
(3)
P 		25.6
(-3)
P 		163
avr 146.3
(3) 		116.1
(1.4) 		145.8
(3) 		34.1
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 77
(-3)
P 		164.9
(3)
P 		118.2
(-0.2)
P 		106.8
(-1)
P 		106.9
(-1)
P 		80.6
(-2.8)
P 		88
B 169.9
(2.3)
P 		178.6
(3)
P 		134
(-0.4)
P 		100.6
(-3)
P 		157
(1.3)
P 		143.7
(0.3)
P 		78
C 168.8
(2.5)
P 		175.8
(3)
P 		116.3
(-1.2)
P 		114.7
(-1.4)
P 		91.7
(-3)
P 		136.6
(0.2)
P 		84
avr 138.6
(-0.2) 		173.1
(3) 		122.8
(-1.6) 		107.4
(-3) 		118.5
(-2) 		120.3
(-1.8) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183698_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1562
Sequence Type Exemplar sequence
Representative Public ID F59A3.3 NCBI
Target Description F59A3.3 /REP_DB=WormBase Gene ID /WP=CE11420 /TR=P91353 /GB=AAB37815.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059212(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059212 NCBI Caenorhabditis elegans F59A3.3 (F59A3.3) mRNA, complete cds. 11/11 None
SNAP00000013436 ENSEMBL cdna:SNAP chromosome:CEL140:I:5505552:5507026:-1 11/11 None
GENEFINDER00000013463 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5505552:5507026:-1 11/11 None
F59A3.3 ENSEMBL cdna:known chromosome:CEL140:I:5505437:5507026:-1 gene:F59A3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5505551-5507026(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A3.3
Entrez Gene 172204 Entrez gene
SwissProt P91353 EMBL-EBI
WormBase CE11420 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587313_AT similar to mitochondrial ribosomal protein L24 cfa
CANINE_2:CFA.12108.1.S1_AT similar to mitochondrial ribosomal protein L24 cfa
CANINE_2:CFA.12108.2.S1_S_AT similar to mitochondrial ribosomal protein L24 cfa
DROSOPHILA_2:1638947_AT mitochondrial ribosomal protein L24 dm
DROSGENOME1:153544_AT mitochondrial ribosomal protein L24 dm
HU35KSUBA:RC_AA259062_AT mitochondrial ribosomal protein L24 hs
HG-U133A:218270_AT mitochondrial ribosomal protein L24 hs
HG-U133_PLUS_2:218270_AT mitochondrial ribosomal protein L24 hs
HG-U133A_2:218270_AT mitochondrial ribosomal protein L24 hs
U133_X3P:G13375698_3P_AT mitochondrial ribosomal protein L24 hs
HG-U95B:55628_AT mitochondrial ribosomal protein L24 hs
MU11KSUBA:AA517775_S_AT mitochondrial ribosomal protein L24 mm
MG-U74AV2:101067_AT mitochondrial ribosomal protein L24 mm
MG-U74BV2:164390_F_AT mitochondrial ribosomal protein L24 mm
MOE430A:1428709_A_AT mitochondrial ribosomal protein L24 mm
MOUSE430A_2:1428709_A_AT mitochondrial ribosomal protein L24 mm
MOUSE430_2:1428709_A_AT mitochondrial ribosomal protein L24 mm
MU19KSUBB:TC27176_AT Mitochondrial ribosomal protein L24, mRNA (cDNA clone MGC:25749 IMAGE:3991689) mm
MU19KSUBB:TC27177_AT Mitochondrial ribosomal protein L24, mRNA (cDNA clone MGC:25749 IMAGE:3991689) mm
MU19KSUBB:TC27178_S_AT Mitochondrial ribosomal protein L24, mRNA (cDNA clone MGC:25749 IMAGE:3991689) mm
MU19KSUBC:TC40307_S_AT Mitochondrial ribosomal protein L24, mRNA (cDNA clone MGC:25749 IMAGE:3991689) mm
RG-U34A:RC_AA892843_AT mitochondrial ribosomal protein L24 rn
RG-U34B:RC_AI012278_AT mitochondrial ribosomal protein L24 rn
RAE230A:1371888_AT mitochondrial ribosomal protein L24 rn
RAT230_2:1371888_AT mitochondrial ribosomal protein L24 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37815 Hypothetical protein F59A3.3 [Caenorhabditis elegans] ref|NP_491613.1| F59A3.3 [Caenorhabditis elegans] 1.0E-163
blast CAE67073 Hypothetical protein CBG12482 [Caenorhabditis briggsae] 1.0E-152
blast AAF52176 CG8849-PA [Drosophila melanogaster] gb|AAM11352.1| LD05344p [Drosophila melanogaster] ref|NP_523476.1| CG8849-PA [Drosophila melanogaster] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR005824 EMBL-EBI KOW 3.6E-8
Sequence
Target Sequence 
>C. ELEGANS:183698_AT
ggacaaatatttctcggctcaactttccaaccaatacttcaatcttcgtcgcccaaaatc
cgaacgaatggccgatacagagtggactttcttcccgggagatcttgtacaagtgatggt
cggaaaagacaaaggacggcaaggacttgtgctaaccactagcagagactccagtgatgt
gatcgttgatggcttgcacacaaagctcggtgaggacatggagggtagtgagaagttagg
agttgataaaacactcaggtggcaagagcaaccgttgtcagtgtcgaagaaacaagtgat
gctggtcgatccgaatgatgaacagccatgtgaagcaagatggcaattaaacggtcctgg
tgatgagtatattcgagtatcaacaagaagtggatatgaaatcccaattccatctcaagc
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAAATATTTCTCGGCTCAACTT 423 523 249 Antisense
AACCAATACTTCAATCTTCGTCGCC 192 147 277 Antisense
TCTTCGTCGCCCAAAATCCGAACGA 31 617 291 Antisense
GATACAGAGTGGACTTTCTTCCCGG 480 421 322 Antisense
TTCTTCCCGGGAGATCTTGTACAAG 244 677 337 Antisense
GCAAGGACTTGTGCTAACCACTAGC 284 321 387 Antisense
GAGACTCCAGTGATGTGATCGTTGA 429 393 413 Antisense
GATGGCTTGCACACAAAGCTCGGTG 234 407 436 Antisense
AGGTGGCAAGAGCAACCGTTGTCAG 161 59 505 Antisense
CAAGTGATGCTGGTCGATCCGAATG 408 183 541 Antisense
TGAAATCCCAATTCCATCTCAAGCT 215 573 645 Antisense
Sequence Source Affymetrix Proprietary Database