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[183697_at]

Description T16A1.4 /REP_DB=WormBase Gene ID /WP=CE13710 /TR=P91444 /GB=AAB37872.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3187
1 2 3 4 range
A 36.8
(-3)
A 		46.8
(-3)
A 		50.1
(-3)
A 		3195.7
(3)
P 		3159
B 70.2
(-2.9)
A 		56.7
(-3)
A 		32.6
(-3)
A 		3180.8
(3)
P 		3148
C 47.8
(-2.9)
A 		58.9
(-2.9)
A 		8.4
(-3)
A 		2794.2
(3)
P 		2786
avr 51.6
(-3) 		54.1
(-3) 		30.4
(-3) 		3056.9
(3) 		3027

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 465
1 2 3 4 5 6 range
A 49.4
(-2.7)
A 		36.5
(-3)
A 		62.5
(-2.5)
A 		52.9
(-2.7)
A 		101.4
(-1.6)
A 		322.1
(3)
P 		286
B 54.8
(-2.6)
A 		46.2
(-2.8)
A 		35.6
(-3)
A 		59.5
(-2.5)
A 		102
(-1.6)
P 		327.1
(3)
P 		292
C 18
(-2.8)
A 		79
(-2)
A 		3.9
(-3)
A 		46
(-2.5)
A 		54.5
(-2.3)
P 		469
(3)
P 		465
avr 40.7
(-2.9) 		53.9
(-2.6) 		34
(-3) 		52.8
(-2.7) 		86
(-2.1) 		372.7
(3) 		339
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 675
1 2 3 4 range
A 13.4
(-3)
A 		10.2
(-3)
A 		13.1
(-3)
A 		467.8
(3)
P 		458
B 22.4
(-2.9)
A 		14
(-2.9)
A 		7.6
(-3)
A 		677.8
(3)
P 		670
C 15.8
(-2.8)
A 		16.9
(-2.8)
A 		2.9
(-3)
A 		471.1
(3)
P 		468
avr 17.2
(-2.9) 		13.7
(-2.9) 		7.9
(-3) 		538.9
(3) 		531

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 9.1
(-3)
A 		13
(-2.7)
A 		13.6
(-2.6)
A 		13.4
(-2.6)
A 		30.6
(-1.1)
A 		78.4
(3)
P 		69
B 19.1
(-2.4)
A 		15.4
(-2.6)
A 		8.6
(-3)
A 		15.8
(-2.6)
A 		41.4
(-1.3)
P 		122
(3)
P 		113
C 6.7
(-2.8)
A 		24.1
(-2.1)
A 		1
(-3)
A 		9.2
(-2.7)
A 		17.6
(-2.4)
P 		157
(3)
P 		156
avr 11.6
(-2.8) 		17.5
(-2.5) 		7.7
(-3) 		12.8
(-2.7) 		29.9
(-1.8) 		119.1
(3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4941
Sequence Type Exemplar sequence
Representative Public ID T16A1.4 NCBI
Target Description T16A1.4 /REP_DB=WormBase Gene ID /WP=CE13710 /TR=P91444 /GB=AAB37872.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061773(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061773 NCBI Caenorhabditis elegans T16A1.4 (T16A1.4) mRNA, complete cds. 11/11 None
SNAP00000022088 ENSEMBL cdna:SNAP chromosome:CEL140:II:2081558:2084892:1 11/11 None
GENEFINDER00000022098 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2081558:2082017:1 11/11 None
T16A1.4 ENSEMBL cdna:known chromosome:CEL140:II:2081558:2082017:1 gene:T16A1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2081556-2082016(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16A1.4
Entrez Gene 188544 Entrez gene
SwissProt P91444 EMBL-EBI
WormBase CE13710 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37872 Hypothetical protein T16A1.4 [Caenorhabditis elegans] ref|NP_494174.1| T16A1.4 [Caenorhabditis elegans] 1.0E-67
blast AAB37872 Hypothetical protein T16A1.4 [Caenorhabditis elegans] ref|NP_494174.1| T16A1.4 [Caenorhabditis elegans] 5.0E-59
blast AAB37874 Hypothetical protein T16A1.3 [Caenorhabditis elegans] ref|NP_494176.1| T16A1.3 [Caenorhabditis elegans] 6.0E-48
blast AAK31412 Hypothetical protein C16A11.6 [Caenorhabditis elegans] ref|NP_494746.2| C16A11.6 [Caenorhabditis elegans] 4.0E-9
Sequence
Target Sequence 
>C. ELEGANS:183697_AT
gaatttcattgtctaccatcttgtttttttatcttggactgcaactattggatgcaacta
tatgtatcttcctgctgttcttaaaaatttggatggtggttcatcgtcatccgaggaatc
tggtggacttaaaggcgtaattccaaaagtgtcagccacagttgctacgaaactagagct
gccttgtattcaggaattcgagacagtagaagtggaggacgagatcaacagacccctttg
tgttgacttgtcagtagctgccggagttgacccaaaagattcaactggtagtattgaagt
cgaacatgctggatctgacggtgggtctattgaactgcacaccaagctgaagcatcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTCATTGTCTACCATCTTGTT 311 325 15 Antisense
AACTATATGTATCTTCCTGCTGTTC 623 139 70 Antisense
GTGGTTCATCGTCATCCGAGGAATC 311 487 110 Antisense
GTGTCAGCCACAGTTGCTACGAAAC 214 487 163 Antisense
GCTACGAAACTAGAGCTGCCTTGTA 641 295 178 Antisense
GAGGACGAGATCAACAGACCCCTTT 456 403 229 Antisense
GACCCCTTTGTGTTGACTTGTCAGT 9 381 245 Antisense
GTCAGTAGCTGCCGGAGTTGACCCA 308 465 264 Antisense
ACATGCTGGATCTGACGGTGGGTCT 330 105 318 Antisense
GTGGGTCTATTGAACTGCACACCAA 210 489 335 Antisense
TGCACACCAAGCTGAAGCATCACTT 446 577 350 Antisense
Sequence Source Affymetrix Proprietary Database