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[183696_at]

Description ZK1010.4 /REP_DB=WormBase Gene ID /WP=CE15501 /TR=O18283 /GB=CAB04970.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 24      4grp_high_8_8 > 46      6grp_highest_nonorm > 80      6grp_total > 02      4grp_total > 49      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 444
1 2 3 4 range
A 93.1
(-3)
P 		482.9
(3)
P 		408.9
(1.9)
P 		110.1
(-2.7)
P 		390
B 89.2
(-3)
P 		532.5
(3)
P 		468.7
(2.1)
P 		88.6
(-3)
A 		444
C 115.2
(-3)
P 		499.1
(3)
P 		440.9
(2.1)
P 		117.9
(-3)
M 		384
avr 99.2
(-3) 		504.8
(3) 		439.5
(2) 		105.5
(-2.9) 		406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 298.3
(1)
P 		357.9
(3)
P 		200.9
(-2.2)
P 		193.3
(-2.4)
P 		175.6
(-3)
P 		191.7
(-2.5)
P 		182
B 241
(0)
P 		327
(3)
P 		221
(-0.7)
P 		194.9
(-1.6)
P 		155.2
(-3)
P 		153.9
(-3)
P 		173
C 214.3
(-0.4)
P 		293.1
(3)
P 		216.2
(-0.3)
P 		200.7
(-1)
P 		196.7
(-1.2)
P 		154.3
(-3)
P 		139
avr 251.2
(0.2) 		326
(3) 		212.7
(-1.3) 		196.3
(-1.9) 		175.8
(-2.7) 		166.6
(-3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 33.9
(-1.8)
P 		104.8
(2.9)
P 		106.9
(3)
P 		16.1
(-3)
P 		91
B 28.5
(-2.5)
P 		131.5
(3)
P 		108.6
(1.8)
P 		18.9
(-3)
A 		113
C 38.1
(-2.2)
P 		143.5
(2.5)
P 		153.7
(3)
P 		19.9
(-3)
M 		134
avr 33.5
(-2.2) 		126.6
(3) 		123.1
(2.8) 		18.3
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 55
(-2.2)
P 		127.3
(3)
P 		43.8
(-3)
P 		49
(-2.6)
P 		53
(-2.3)
P 		46.7
(-2.8)
P 		84
B 83.9
(0.4)
P 		108.8
(3)
P 		53.7
(-2.8)
P 		51.6
(-3)
P 		63
(-1.8)
P 		57.4
(-2.4)
P 		57
C 79.4
(1.8)
P 		89.4
(3)
P 		55
(-1.2)
P 		40.4
(-3)
P 		63.6
(-0.2)
P 		51.6
(-1.6)
P 		49
avr 72.8
(-0.5) 		108.5
(3) 		50.8
(-2.6) 		47
(-3) 		59.9
(-1.7) 		51.9
(-2.5) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183696_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6626
Sequence Type Exemplar sequence
Representative Public ID ZK1010.4 NCBI
Target Description ZK1010.4 /REP_DB=WormBase Gene ID /WP=CE15501 /TR=O18283 /GB=CAB04970.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067296 NCBI Caenorhabditis elegans ZK1010.4 (ZK1010.4) mRNA, complete cds. 11/11 None
SNAP00000035100 ENSEMBL cdna:SNAP chromosome:CEL140:III:12980609:12986560:1 10/11 None
GENEFINDER00000035114 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12980609:12983826:1 11/11 None
ZK1010.4 ENSEMBL cdna:known chromosome:CEL140:III:12980609:12983826:1 gene:ZK1010.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12980604-12983822(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1010.4
Entrez Gene 191490 Entrez gene
SwissProt O18283 EMBL-EBI
WormBase CE15501 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04970 Hypothetical protein ZK1010.4 [Caenorhabditis elegans] ref|NP_499697.1| ZK1010.4 [Caenorhabditis elegans] 1.0E-138
blast CAB04970 Hypothetical protein ZK1010.4 [Caenorhabditis elegans] ref|NP_499697.1| ZK1010.4 [Caenorhabditis elegans] 1.0E-112
blast CAE69563 Hypothetical protein CBG15775 [Caenorhabditis briggsae] 1.0E-107
blast CAE69563 Hypothetical protein CBG15775 [Caenorhabditis briggsae] 5.0E-84
blast CAD27184 Hypothetical protein T20G5.13 [Caenorhabditis elegans] ref|NP_741267.1| T20G5.13 [Caenorhabditis elegans] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 7.3E-66
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 3.7E-47
Sequence
Target Sequence 
>C. ELEGANS:183696_AT
gaaccgcgccagaagtgcagtgacacaaaaagtcgagggaatctttatcgatgactctgg
aaattccaaggaaaattcgagagaagttggtggtccagtgggattaccgaagctgaaggg
tcagaaaaacaacatcttcggaattcgccgcgagtcttctcgtggatcctctgaggttcc
ccagccaacagccgtgaattacgagaactccacattgctacagtataccaatcccaactt
catcttccgacaatgttgcgaacaacggggacttccagacgcttgtctcaataagtgtca
tttcaatacctatacgaaagatgcgctccaaggaatgtacttcaaaaccgacggttgtcc
actggaggccgccgctgatatgcacttttgcgcggctcagggtagagatcatacacagtg
ttgtgttcgaaatggtgttactactacgctggccgggcaaaaatgtttgactttttgtga
tcagagacctgatagagtaacaaaacttgattattcctacgtgccatgctacgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCGCGCCAGAAGTGCAGTGACA 8 347 186 Antisense
ACATCTTCGGAATTCGCCGCGAGTC 81 107 317 Antisense
TTCTCGTGGATCCTCTGAGGTTCCC 488 683 342 Antisense
TTACGAGAACTCCACATTGCTACAG 207 683 384 Antisense
AGTATACCAATCCCAACTTCATCTT 192 63 407 Antisense
ACTTCATCTTCCGACAATGTTGCGA 527 103 422 Antisense
GTTGCGAACAACGGGGACTTCCAGA 52 439 440 Antisense
GACTTCCAGACGCTTGTCTCAATAA 577 371 455 Antisense
CCGCCGCTGATATGCACTTTTGCGC 308 263 554 Antisense
AAATGGTGTTACTACTACGCTGGCC 664 119 615 Antisense
TATTCCTACGTGCCATGCTACGATC 488 663 697 Antisense
Sequence Source Affymetrix Proprietary Database