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[183695_at]

Description F58F6.3 /REP_DB=WormBase Gene ID /WP=CE17138 /TR=O44172 /GB=AAB88357.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 59.1
(3)
A 		25.3
(-1.2)
A 		26.2
(-1.1)
A 		10.5
(-3)
A 		49
B 26.1
(3)
A 		14.9
(-1.6)
A 		11.5
(-3)
A 		18.9
(0)
A 		15
C 7.7
(-3)
A 		16.6
(-0.8)
A 		8.4
(-2.8)
A 		32.5
(3)
A 		25
avr 31
(3) 		18.9
(-1.7) 		15.4
(-3) 		20.6
(-1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 4.7
(-3)
A 		11.3
(-2.5)
A 		62.3
(1.4)
A 		7.8
(-2.8)
A 		83.4
(3)
A 		6.4
(-2.9)
A 		79
B 35.5
(-0.3)
A 		63.1
(3)
A 		12.5
(-3)
A 		16.7
(-2.5)
A 		14.4
(-2.8)
A 		32.4
(-0.6)
A 		51
C 28
(3)
A 		17.3
(0.3)
A 		7.1
(-2.2)
A 		18.1
(0.5)
A 		4.1
(-3)
A 		8
(-2)
A 		24
avr 22.7
(-0.4) 		30.6
(2) 		27.3
(1) 		14.2
(-3) 		34
(3) 		15.6
(-2.6) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.5
(3)
A 		5.5
(-1.8)
A 		6.8
(-1.4)
A 		1.5
(-3)
A 		20
B 8.3
(3)
A 		3.7
(-1.9)
A 		2.7
(-3)
A 		4
(-1.6)
A 		6
C 2.5
(-3)
A 		4.8
(1.6)
A 		2.9
(-2.2)
A 		5.5
(3)
A 		3
avr 10.8
(3) 		4.7
(-2.2) 		4.1
(-2.7) 		3.7
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 0.9
(-3)
A 		4
(-2.2)
A 		13.6
(0.1)
A 		2
(-2.7)
A 		25.2
(3)
A 		1.6
(-2.8)
A 		24
B 12.4
(0.1)
A 		21
(3)
A 		3
(-3)
A 		4.4
(-2.5)
A 		5.9
(-2)
A 		12.1
(0)
A 		18
C 10.4
(3)
A 		5.3
(-0.4)
A 		1.8
(-2.7)
A 		3.6
(-1.5)
A 		1.3
(-3)
A 		2.7
(-2.1)
A 		9
avr 7.9
(0.7) 		10.1
(2.4) 		6.1
(-0.8) 		3.3
(-3) 		10.8
(3) 		5.5
(-1.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10836
Sequence Type Exemplar sequence
Representative Public ID F58F6.3 NCBI
Target Description F58F6.3 /REP_DB=WormBase Gene ID /WP=CE17138 /TR=O44172 /GB=AAB88357.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067671(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067671 NCBI Caenorhabditis elegans F58F6.3 (F58F6.3) mRNA, complete cds. 11/11 None
F58F6.3 ENSEMBL cdna:known chromosome:CEL140:IV:1375368:1376562:-1 gene:F58F6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1375373-1376568(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58F6.3
Entrez Gene 186530 Entrez gene
SwissProt O44172 EMBL-EBI
WormBase CE17138 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88357 Hypothetical protein F58F6.3 [Caenorhabditis elegans] ref|NP_500072.1| F58F6.3 [Caenorhabditis elegans] 9.0E-62
Sequence
Target Sequence 
>C. ELEGANS:183695_AT
gagcaaaaggagccgggacccaagaagggggaggagacaaagggggtacttggggaagag
ggtctatgggagattatggcctggcaatggacctagacaacacccatacttgttgggaac
ccgtaaatcattcactgaaataggaaatataaaactacttaaatcatataatcttattcg
gatatggaaaaagttaccaaaggaagaaaagtccaagaagaagaagaagaaactctcttt
ccttagcgccctgtccgccggcggagagggaggcgctaaaaataaccgcgccgtttgctt
agcggcatccaggcctcccccaccctacttgatctattccggacgccgggcaatgcccag
cgcggaatggtcaagacgcagatacacacagagctctggagacaacgcagcgcataccgt
ttgtttgaccagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAAAAGGAGCCGGGACCCAAGA 32 391 39 Antisense
TATGGCCTGGCAATGGACCTAGACA 500 653 113 Antisense
GACCTAGACAACACCCATACTTGTT 512 383 128 Antisense
GGGAACCCGTAAATCATTCACTGAA 208 493 153 Antisense
AGAAGAAACTCTCTTTCCTTAGCGC 432 71 263 Antisense
CCCTGTCCGCCGGCGGAGAGGGAGG 77 261 287 Antisense
AAATAACCGCGCCGTTTGCTTAGCG 154 117 318 Antisense
GATCTATTCCGGACGCCGGGCAATG 294 419 369 Antisense
CAATGCCCAGCGCGGAATGGTCAAG 661 179 389 Antisense
GAGCTCTGGAGACAACGCAGCGCAT 227 387 429 Antisense
AGCGCATACCGTTTGTTTGACCAGG 294 81 447 Antisense
Sequence Source Affymetrix Proprietary Database