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[183693_at]

Description Y50E8A.5 /REP_DB=WormBase Gene ID /WP=CE22307 /TR=Q9NAF3 /GB=CAB55048.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 05      6grp_total > 05      4grp_total > 43      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 96
(-3)
P 		123.8
(2.8)
P 		100.5
(-2.1)
A 		124.6
(3)
P 		29
B 126
(2.1)
P 		131.2
(3)
M 		114.8
(0.2)
A 		96.2
(-3)
P 		35
C 112.8
(-3)
P 		134.4
(3)
P 		123
(-0.2)
M 		120.7
(-0.8)
P 		22
avr 111.6
(-3) 		129.8
(3) 		112.8
(-2.6) 		113.8
(-2.3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 197
(3)
P 		130.9
(-0.2)
P 		131.6
(-0.1)
P 		71.8
(-3)
A 		119.7
(-0.7)
P 		77.1
(-2.7)
A 		125
B 209.9
(3)
P 		171.7
(1.1)
P 		134.8
(-0.7)
P 		133
(-0.8)
P 		119
(-1.5)
P 		89.7
(-3)
P 		120
C 191.9
(3)
P 		188.4
(2.8)
P 		112
(-0.8)
P 		112.7
(-0.8)
P 		65.3
(-3)
A 		86.3
(-2)
P 		127
avr 199.6
(3) 		163.7
(1.1) 		126.1
(-0.8) 		105.8
(-1.9) 		101.3
(-2.1) 		84.4
(-3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 35
(3)
P 		26.9
(0.1)
P 		26.3
(-0.1)
A 		18.2
(-3)
P 		17
B 40.2
(3)
P 		32.4
(0.6)
M 		26.6
(-1.1)
A 		20.5
(-3)
P 		20
C 37.3
(1.5)
P 		38.6
(1.9)
P 		42.9
(3)
M 		20.4
(-3)
P 		23
avr 37.5
(3) 		32.6
(1.3) 		31.9
(1.1) 		19.7
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 36.3
(0.8)
P 		46.5
(3)
P 		28.6
(-0.8)
P 		18.2
(-3)
A 		36.1
(0.8)
P 		18.8
(-2.9)
A 		28
B 73.1
(3)
P 		57.1
(0.6)
P 		32.7
(-3)
P 		35.2
(-2.6)
P 		48.3
(-0.7)
P 		33.4
(-2.9)
P 		40
C 71.1
(3)
P 		57.5
(1.4)
P 		28.5
(-2.1)
P 		22.7
(-2.8)
P 		21.1
(-3)
A 		28.9
(-2.1)
P 		50
avr 60.2
(3) 		53.7
(1.9) 		29.9
(-2.2) 		25.4
(-3) 		35.2
(-1.3) 		27
(-2.7) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14618
Sequence Type Exemplar sequence
Representative Public ID Y50E8A.5 NCBI
Target Description Y50E8A.5 /REP_DB=WormBase Gene ID /WP=CE22307 /TR=Q9NAF3 /GB=CAB55048.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074238 NCBI Caenorhabditis elegans Y50E8A.5 (Y50E8A.5) mRNA, complete cds. 11/11 None
SNAP00000008980 ENSEMBL cdna:SNAP chromosome:CEL140:V:14737397:14738724:-1 10/11 None
GENEFINDER00000009986 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14737397:14738724:-1 11/11 None
Y50E8A.5 ENSEMBL cdna:known chromosome:CEL140:V:14737397:14738724:-1 gene:Y50E8A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14737396-14738724(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50E8A.5
Entrez Gene 190106 Entrez gene
SwissProt Q9NAF3 EMBL-EBI
WormBase CE22307 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5179 hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55048 Hypothetical protein Y50E8A.5 [Caenorhabditis elegans] ref|NP_506639.1| Y50E8A.5 [Caenorhabditis elegans] 1.0E-139
blast CAB55048 Hypothetical protein Y50E8A.5 [Caenorhabditis elegans] ref|NP_506639.1| Y50E8A.5 [Caenorhabditis elegans] 7.0E-92
blast CAE60842 Hypothetical protein CBG04551 [Caenorhabditis briggsae] 2.0E-73
blast CAE60842 Hypothetical protein CBG04551 [Caenorhabditis briggsae] 4.0E-73
Sequence
Target Sequence 
>C. ELEGANS:183693_AT
gttacagtaactcgttgtcagcgcggcgagacccaaaatatgaactgggttaaatatgga
ttgcctgttaatcaaggggactcaatcgtcagtgatgacaagtgtttggtagagaacaag
ctgaaaaaggatggggattcttgtgctggatactgtatgacaatcaatattacaagaact
gacgatgaagctgctggcaagacgattgctattgtccgtgactgtcaagttcgaactcgt
aatttgcctgacctattggaatctgacgctcctctctgcacatcctatgaaaaattggtc
aatcgccgaaatgtgaacatcaccacatgttactgccgcggccactactgcaacggactc
ggatttgccgaagcgacacgacactccaaagcactcgaacttcctgttaattccattgat
ccgaaagaatcttcgggttttccatgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACAGTAACTCGTTGTCAGCGCG 349 445 262 Antisense
GGATGGGGATTCTTGTGCTGGATAC 205 515 390 Antisense
GAACTGACGATGAAGCTGCTGGCAA 360 349 437 Antisense
GACGATTGCTATTGTCCGTGACTGT 314 377 462 Antisense
CGAACTCGTAATTTGCCTGACCTAT 328 253 493 Antisense
GACCTATTGGAATCTGACGCTCCTC 433 383 511 Antisense
TCCTCTCTGCACATCCTATGAAAAA 327 593 531 Antisense
GAACATCACCACATGTTACTGCCGC 114 351 576 Antisense
CCACTACTGCAACGGACTCGGATTT 458 271 603 Antisense
AGCACTCGAACTTCCTGTTAATTCC 587 75 651 Antisense
AAGAATCTTCGGGTTTTCCATGCAC 49 153 686 Antisense
Sequence Source Affymetrix Proprietary Database