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[183692_s_at]

Description R05A10.3 /REP_DB=WormBase Gene ID /WP=CE16289 /TR=O45701 /GB=CAB05265.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 20      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 51      6grp_total > 33      4grp_total > 45      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 315
1 2 3 4 range
A 555.5
(2)
P 		600.8
(3)
P 		418.7
(-1.2)
P 		341.7
(-3)
P 		259
B 649.9
(3)
P 		458.3
(-0.6)
P 		334.6
(-3)
P 		342
(-2.9)
P 		315
C 590
(3)
P 		571.7
(2.5)
P 		357.7
(-3)
P 		412.5
(-1.6)
P 		232
avr 598.5
(3) 		543.6
(1.6) 		370.3
(-2.9) 		365.4
(-3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 525
1 2 3 4 5 6 range
A 653.7
(3)
P 		638.8
(2.8)
P 		575.7
(1.8)
P 		533.8
(1.1)
P 		276.8
(-3)
P 		343.2
(-1.9)
P 		377
B 635
(1.7)
P 		562.6
(0.7)
P 		737.7
(3)
P 		484.5
(-0.3)
P 		333.5
(-2.3)
P 		279.4
(-3)
P 		458
C 682.9
(1.6)
P 		557.6
(0.2)
P 		802
(3)
P 		458.5
(-1)
P 		342.1
(-2.3)
P 		284.1
(-3)
P 		518
avr 657.2
(2.3) 		586.3
(1.2) 		705.1
(3) 		492.3
(-0.2) 		317.5
(-2.8) 		302.2
(-3) 		403
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 202.2
(3)
P 		130.4
(0.2)
P 		109.5
(-0.7)
P 		50
(-3)
P 		152
B 207.2
(3)
P 		113.2
(-1.2)
P 		77.5
(-2.8)
P 		72.9
(-3)
P 		134
C 195.3
(3)
P 		164.4
(1.5)
P 		124.7
(-0.4)
P 		69.6
(-3)
P 		126
avr 201.6
(3) 		136
(0.1) 		103.9
(-1.3) 		64.2
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 120.5
(-1.5)
P 		227.2
(3)
P 		125.4
(-1.3)
P 		135.4
(-0.8)
P 		83.5
(-3)
P 		83.5
(-3)
P 		144
B 220.9
(3)
P 		187.3
(1.3)
P 		179.1
(0.9)
P 		128.3
(-1.8)
P 		135.5
(-1.4)
P 		104.2
(-3)
P 		117
C 253.1
(3)
P 		170.1
(-0.1)
P 		204.1
(1.2)
P 		92.2
(-3)
P 		110.7
(-2.3)
P 		95.1
(-2.9)
P 		161
avr 198.2
(3) 		194.9
(2.8) 		169.5
(1.3) 		118.6
(-1.6) 		109.9
(-2.1) 		94.3
(-3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183692_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8827
Sequence Type Exemplar sequence
Representative Public ID R05A10.3 NCBI
Target Description R05A10.3 /REP_DB=WormBase Gene ID /WP=CE16289 /TR=O45701 /GB=CAB05265.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070318 NCBI Caenorhabditis elegans R05A10.3 (R05A10.3) mRNA, complete cds. 11/11 None
SNAP00000012476 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14173611:14176391:-1 9/11 None
GENEFINDER00000012480 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14173611:14176442:-1 11/11 None
R05A10.3 ENSEMBL cdna:known chromosome:CEL140:IV:14173611:14176442:-1 gene:R05A10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14173616-14176448(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05A10.3
Entrez Gene 178371 Entrez gene
SwissProt O45701 EMBL-EBI
WormBase CE16289 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05265 Hypothetical protein R05A10.3 [Caenorhabditis elegans] ref|NP_502719.1| R05A10.3 [Caenorhabditis elegans] 0.0
blast CAB05265 Hypothetical protein R05A10.3 [Caenorhabditis elegans] ref|NP_502719.1| R05A10.3 [Caenorhabditis elegans] 1.0E-165
blast CAE71761 Hypothetical protein CBG18751 [Caenorhabditis briggsae] 1.0E-102
blast CAE71761 Hypothetical protein CBG18751 [Caenorhabditis briggsae] 3.0E-79
Sequence
Target Sequence 
>C. ELEGANS:183692_S_AT
ctacccaggcgggtccacagatgttccaggaggatccacggattctccaattgatggatc
tactgatctacctattgagagtattccaccagtgtactggaccaaatcgacgccaaaaga
ttttacaattagtcagaaaatcgatcagagcagtccgggatacaatcagttgctacatat
gttggaggatctcaagcatcgtcgcaaggaagaagaattcattgaggctgcacagaccga
attctacattgacagggcttctacgttgatggattctattgaaagttcattcactgattc
ggcgcttgcaaacatcacaaagtcacaagagtacatcaaaggtttgctggcggatgcttc
tttaccggtccgccaaggctactcagaaatcgtgtccctcaccagtcaacccagtttcta
ctacattccaaaacgccagagatatttgatggttaataagattgtgacagacatgagttc
tgctagtcaacttgaaataatgactataaatcaacaagcgaagacgtattgccgggatgc
aaatgtggatactccgccgtacgcattgggaaacttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACCCAGGCGGGTCCACAGATGTT 585 223 558 Antisense
GGATCCACGGATTCTCCAATTGATG 59 513 589 Antisense
GTGTACTGGACCAAATCGACGCCAA 125 479 649 Antisense
TGGAGGATCTCAAGCATCGTCGCAA 199 549 740 Antisense
AGGCTGCACAGACCGAATTCTACAT 544 51 782 Antisense
GACAGGGCTTCTACGTTGATGGATT 689 367 808 Antisense
ATTCACTGATTCGGCGCTTGCAAAC 580 11 846 Antisense
AAAGGTTTGCTGGCGGATGCTTCTT 565 121 895 Antisense
AGGCTACTCAGAAATCGTGTCCCTC 193 53 933 Antisense
TCAACCCAGTTTCTACTACATTCCA 690 617 963 Antisense
CCGCCGTACGCATTGGGAAACTTGT 627 261 1111 Antisense
Sequence Source Affymetrix Proprietary Database