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[183691_at]

Description F35C8.2 /REP_DB=WormBase Gene ID /WP=CE04494 /TR=Q20030 /GB=AAA81713.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_high_8_8 > 58      6grp_highest_nonorm > 91      6grp_total > 81      4grp_total > 63      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 140.6
(3)
P 		98
(-0.7)
P 		71
(-3)
P 		95.5
(-0.9)
A 		70
B 139.7
(1)
P 		113.2
(-0.2)
P 		182.1
(3)
P 		52
(-3)
P 		130
C 161.7
(3)
P 		100.1
(-3)
P 		150.2
(1.9)
P 		112.2
(-1.8)
A 		62
avr 147.3
(3) 		103.8
(-1.3) 		134.4
(1.7) 		86.6
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 72.7
(-3)
P 		136
(-2)
P 		261.7
(0.1)
P 		443.1
(3)
P 		267.2
(0.2)
P 		137.9
(-1.9)
P 		370
B 126.4
(-3)
P 		140.2
(-2.6)
P 		214.1
(-0.8)
P 		331.1
(2)
P 		372.4
(3)
P 		124.7
(-3)
P 		248
C 85.4
(-3)
P 		119.7
(-2.5)
P 		207.9
(-1.1)
P 		480.6
(3)
P 		222.5
(-0.9)
P 		130.3
(-2.3)
P 		395
avr 94.8
(-3) 		132
(-2.3) 		227.9
(-0.5) 		418.3
(3) 		287.4
(0.6) 		131
(-2.3) 		324
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 51.2
(3)
P 		21.3
(-1.8)
P 		18.6
(-2.3)
P 		14
(-3)
A 		37
B 44.6
(3)
P 		28
(0)
P 		42.2
(2.6)
P 		11.1
(-3)
P 		34
C 53.5
(3)
P 		28.8
(-1.3)
P 		52.4
(2.8)
P 		18.9
(-3)
A 		35
avr 49.8
(3) 		26
(-1.1) 		37.7
(0.9) 		14.7
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 13.4
(-3)
P 		48.4
(-0.9)
P 		57
(-0.4)
P 		112.4
(3)
P 		80.6
(1.1)
P 		33.6
(-1.8)
P 		99
B 44
(-3)
P 		46.7
(-2.8)
P 		52
(-2.6)
P 		87.7
(-0.6)
P 		151.3
(3)
P 		46.5
(-2.9)
P 		107
C 31.6
(-3)
P 		36.5
(-2.5)
P 		52.9
(-1)
P 		96.6
(3)
P 		72
(0.7)
P 		43.6
(-1.9)
P 		65
avr 29.7
(-3) 		43.9
(-1.8) 		54
(-1) 		98.9
(2.8) 		101.3
(3) 		41.2
(-2) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183691_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16898
Sequence Type Exemplar sequence
Representative Public ID F35C8.2 NCBI
Target Description F35C8.2 /REP_DB=WormBase Gene ID /WP=CE04494 /TR=Q20030 /GB=AAA81713.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076514 NCBI Caenorhabditis elegans F35C8.2 (F35C8.2) mRNA, complete cds. 11/11 None
SNAP00000043833 ENSEMBL cdna:SNAP chromosome:CEL140:X:5375035:5376801:1 11/11 None
F35C8.2 ENSEMBL cdna:known chromosome:CEL140:X:5375035:5375986:1 gene:F35C8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5375035-5375987(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35C8.2
Entrez Gene 180811 Entrez gene
SwissProt Q58AU8 EMBL-EBI
WormBase CE38342 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAX55693 Hypothetical protein F35C8.2 [Caenorhabditis elegans] ref|NP_508915.2| F35C8.2 [Caenorhabditis elegans] 1.0E-149
blast AAX55693 Hypothetical protein F35C8.2 [Caenorhabditis elegans] ref|NP_508915.2| F35C8.2 [Caenorhabditis elegans] 1.0E-148
blast AAX55692 Hypothetical protein F35C8.1 [Caenorhabditis elegans] ref|NP_508916.2| F35C8.1 [Caenorhabditis elegans] 1.0E-138
blast T16259 hypothetical protein F35C8.1 - Caenorhabditis elegans 1.0E-138
blast T16258 hypothetical protein F35C8.2 - Caenorhabditis elegans 1.0E-132
blast AAX55693 Hypothetical protein F35C8.2 [Caenorhabditis elegans] ref|NP_508915.2| F35C8.2 [Caenorhabditis elegans] 1.0E-132
blast AAX55692 Hypothetical protein F35C8.1 [Caenorhabditis elegans] ref|NP_508916.2| F35C8.1 [Caenorhabditis elegans] 1.0E-125
blast AAX55692 Hypothetical protein F35C8.1 [Caenorhabditis elegans] ref|NP_508916.2| F35C8.1 [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 8.1E-20
Pfam IPR000719 EMBL-EBI Protein kinase 7.0E-31
Pfam IPR000719 EMBL-EBI Protein kinase 2.9E-39
Sequence
Target Sequence 
>C. ELEGANS:183691_AT
acggtgctcttggttatatctgtctgtctggtaggaatctgaacgttccggaagatatgc
ttcatggtggagtaagaattggaagtggtgaaggacaatcagcagtgtaccgcttaatat
acaatggaatggttattgcaagaaaagatgtagcggtaagattacctcaaggcggagatg
aagattcaacaaataaattaatggcaaaacgacttagagaagtgaatgtaatcaatggat
gtgctccatgtccgttcattgtgcatttctttggatattacgttcacaagtataaagact
gcgtgaaaattcatatcttcatggaggaaatggcgctcagtgcatccgttctcaaaaaag
aagtactgaaacgaggcggaatagttcccgagtttgtaataggacgtatcgcttgctctg
taattcacgcaatgtggtttttgaaggagaaaatgcaaatcattcatcgggatattaaac
cagggaatattttgattgactatgatgggagagtcaaaatttgtgactttggcataagtg
gaattcttcaagactccattgccgtttcagctacggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGTGCTCTTGGTTATATCTGTCT 637 95 95 Antisense
ATATCTGTCTGTCTGGTAGGAATCT 629 19 110 Antisense
CTGAACGTTCCGGAAGATATGCTTC 124 239 133 Antisense
CAATCAGCAGTGTACCGCTTAATAT 125 181 190 Antisense
GGTAAGATTACCTCAAGGCGGAGAT 168 379 249 Antisense
GGAGGAAATGGCGCTCAGTGCATCC 447 513 417 Antisense
CTCAGTGCATCCGTTCTCAAAAAAG 456 229 430 Antisense
GAGGCGGAATAGTTCCCGAGTTTGT 146 405 467 Antisense
ATAGGACGTATCGCTTGCTCTGTAA 60 23 493 Antisense
GAATTCTTCAAGACTCCATTGCCGT 188 325 635 Antisense
CTCCATTGCCGTTTCAGCTACGGGA 376 235 648 Antisense
Sequence Source Affymetrix Proprietary Database