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[183690_at]

Description C08F11.7 /REP_DB=WormBase Gene ID /WP=CE17384 /TR=Q9U3Q7 /GB=CAB62782.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 61.1
(-0.2)
A 		111.4
(3)
A 		16
(-3)
A 		107
(2.7)
P 		95
B 12.9
(-3)
A 		63.4
(0.5)
A 		21.6
(-2.4)
A 		99.5
(3)
A 		87
C 59
(1.6)
A 		73.5
(3)
A 		11.3
(-3)
A 		73.2
(3)
A 		62
avr 44.3
(-0.8) 		82.8
(2.2) 		16.3
(-3) 		93.2
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 100.2
(3)
A 		49.2
(-0.4)
A 		77.4
(1.5)
A 		10.9
(-3)
A 		11.9
(-2.9)
A 		89.2
(2.3)
A 		89
B 26.6
(-3)
A 		37.4
(-1.7)
A 		49.4
(-0.3)
A 		44.1
(-1)
A 		77.9
(3)
A 		44.5
(-0.9)
A 		51
C 30.5
(-2)
A 		94.7
(3)
A 		17.9
(-3)
A 		58.6
(0.2)
A 		41.7
(-1.1)
A 		47
(-0.7)
A 		77
avr 52.4
(0.9) 		60.4
(3) 		48.2
(-0.3) 		37.9
(-3) 		43.8
(-1.4) 		60.2
(2.9) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 22.2
(2.4)
A 		24.2
(3)
A 		4.2
(-3)
A 		15.7
(0.5)
P 		20
B 4.1
(-3)
A 		15.7
(1.1)
A 		5
(-2.7)
A 		21.2
(3)
A 		17
C 19.5
(2.4)
A 		21.1
(3)
A 		3.9
(-3)
A 		12.3
(-0.1)
A 		17
avr 15.3
(1.1) 		20.3
(3) 		4.4
(-3) 		16.4
(1.5) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 18.5
(2)
A 		17.5
(1.7)
A 		16.9
(1.5)
A 		2.8
(-3)
A 		3.6
(-2.7)
A 		21.7
(3)
A 		19
B 9.2
(-3)
A 		12.4
(-2.1)
A 		12
(-2.3)
A 		11.7
(-2.3)
A 		31.7
(3)
A 		16.6
(-1)
A 		23
C 11.3
(-1.3)
A 		28.9
(3)
A 		4.6
(-3)
A 		11.8
(-1.2)
A 		13.5
(-0.8)
A 		15.7
(-0.3)
A 		24
avr 13
(-0.7) 		19.6
(3) 		11.2
(-1.7) 		8.8
(-3) 		16.3
(1.2) 		18
(2.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8794
Sequence Type Exemplar sequence
Representative Public ID C08F11.7 NCBI
Target Description C08F11.7 /REP_DB=WormBase Gene ID /WP=CE17384 /TR=Q9U3Q7 /GB=CAB62782.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070231 NCBI Caenorhabditis elegans C08F11.7 (C08F11.7) mRNA, complete cds. 11/11 None
SNAP00000042601 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13637371:13638494:1 11/11 None
GENEFINDER00000042613 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13633468:13638494:1 11/11 None
C08F11.7 ENSEMBL cdna:known chromosome:CEL140:IV:13637671:13638494:1 gene:C08F11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13637676-13638500(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F11.7
Entrez Gene 182422 Entrez gene
SwissProt Q9U3Q7 EMBL-EBI
WormBase CE17384 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB62781 Hypothetical protein C08F11.5 [Caenorhabditis elegans] ref|NP_502631.1| C08F11.5 [Caenorhabditis elegans] 1.0E-179
blast CAB62782 Hypothetical protein C08F11.7 [Caenorhabditis elegans] ref|NP_502632.1| C08F11.7 [Caenorhabditis elegans] 1.0E-123
blast CAB07206 Hypothetical protein F47H4.7 [Caenorhabditis elegans] ref|NP_507390.1| F47H4.7 [Caenorhabditis elegans] 3.0E-32
blast CAB07698 Hypothetical protein Y48E1B.13a [Caenorhabditis elegans] ref|NP_001022452.1| CaSPase family member (csp-1) [Caenorhabditis elegans] gb|AAC98292.1| caspase-related protein 1A [Caenorhabditis elegans] 3.0E-9
blast CAB07698 Hypothetical protein Y48E1B.13a [Caenorhabditis elegans] ref|NP_001022452.1| CaSPase family member (csp-1) [Caenorhabditis elegans] gb|AAC98292.1| caspase-related protein 1A [Caenorhabditis elegans] 4.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 4.8E-32
Pfam IPR006570 EMBL-EBI SPK 4.8E-32
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.8E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-10
Pfam IPR006570 EMBL-EBI SPK 4.8E-32
Sequence
Target Sequence 
>C. ELEGANS:183690_AT
caattggtgatgtctcgcatgcttcttcagctgttgcttacctgccagcagtgctaccaa
catcacaaaaggcaatcccatcaaattttttgttcttcctgaagcagcaaacgaaggaca
tccagaagccgctcgagttgcgatcacttttccgcgggtacatagcgtatgcgaaaagta
ggaaacagatggaaacgatgatgcgactaatcattccacagctttcaaaaacggtagaag
aaacaacggacttcagcgaccaggaaaaagttcaaatgatctttggagcacgaattcgaa
tgaatcagtcattctgggagaggttcaaaccttctgcgcatctgacactcgacaaattct
ctcggcttgcattcttcaagtcggacacattgttgttgatagctgataggtgggaacttc
cggatggaactatgaataaaagatggtggggcaaaggtgaacagccagtgatcatcgagg
gattgaccatcagagctcattcaacttcgtcatcagaaggtcccaccgataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTGGTGATGTCTCGCATGCTTC 27 181 74 Antisense
TGTTGCTTACCTGCCAGCAGTGCTA 253 561 105 Antisense
ACATCCAGAAGCCGCTCGAGTTGCG 377 107 191 Antisense
CTCGAGTTGCGATCACTTTTCCGCG 353 233 205 Antisense
GACTAATCATTCCACAGCTTTCAAA 430 373 278 Antisense
AAACAACGGACTTCAGCGACCAGGA 636 127 314 Antisense
AGAGGTTCAAACCTTCTGCGCATCT 51 69 392 Antisense
GACACTCGACAAATTCTCTCGGCTT 529 367 417 Antisense
CTCTCGGCTTGCATTCTTCAAGTCG 286 231 432 Antisense
TCAGAGCTCATTCAACTTCGTCATC 39 625 563 Antisense
CGTCATCAGAAGGTCCCACCGATAA 259 245 581 Antisense
Sequence Source Affymetrix Proprietary Database