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[183688_at]

Description F59A3.2 /REP_DB=WormBase Gene ID /WP=CE11418 /TR=P91357 /GB=AAB37819.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 28      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 89.9
(1)
A 		95.2
(1.6)
A 		55.1
(-3)
A 		107.9
(3)
A 		53
B 79.9
(0.6)
A 		103.8
(3)
A 		44.1
(-3)
A 		75.6
(0.2)
A 		60
C 69.7
(-3)
A 		86.6
(-1.2)
A 		79.4
(-2)
A 		127.4
(3)
A 		58
avr 79.8
(-0.2) 		95.2
(1.9) 		59.5
(-3) 		103.6
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 113.7
(-2)
A 		87
(-2.7)
A 		76.6
(-3)
A 		146.4
(-1.1)
P 		236.2
(1.3)
P 		301.9
(3)
P 		225
B 54.5
(-3)
A 		75.3
(-2.6)
P 		105.9
(-2)
A 		100.7
(-2.1)
P 		235.3
(0.5)
P 		362.6
(3)
P 		308
C 48.6
(-3)
A 		89.6
(-2.2)
A 		107.6
(-1.9)
P 		169.8
(-0.7)
P 		177.6
(-0.6)
P 		365.4
(3)
P 		317
avr 72.3
(-3) 		84
(-2.7) 		96.7
(-2.5) 		139
(-1.5) 		216.4
(0.2) 		343.3
(3) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 32.7
(3)
A 		20.7
(-0.9)
A 		14.4
(-3)
A 		15.8
(-2.5)
A 		18
B 25.5
(3)
A 		25.6
(3)
A 		10.2
(-3)
A 		16.1
(-0.7)
A 		15
C 23.1
(-1.5)
A 		24.9
(0.3)
A 		27.7
(3)
A 		21.5
(-3)
A 		6
avr 27.1
(3) 		23.7
(0.9) 		17.4
(-3) 		17.8
(-2.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 21
(-2.5)
A 		30.9
(-1.5)
A 		16.7
(-3)
A 		37.1
(-0.8)
P 		71.3
(2.8)
P 		73.5
(3)
P 		57
B 18.9
(-3)
A 		25.1
(-2.7)
P 		25.7
(-2.6)
A 		26.7
(-2.6)
P 		95.6
(1)
P 		135.2
(3)
P 		116
C 18
(-3)
A 		27.3
(-2.5)
A 		27.4
(-2.5)
P 		34.1
(-2.1)
P 		57.5
(-0.7)
P 		122.3
(3)
P 		104
avr 19.3
(-3) 		27.8
(-2.4) 		23.3
(-2.7) 		32.6
(-2.1) 		74.8
(0.7) 		110.3
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1986
Sequence Type Exemplar sequence
Representative Public ID F59A3.2 NCBI
Target Description F59A3.2 /REP_DB=WormBase Gene ID /WP=CE11418 /TR=P91357 /GB=AAB37819.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059216(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059216 NCBI Caenorhabditis elegans F59A3.2a (F59A3.2) mRNA, complete cds. 11/11 None
SNAP00000013438 ENSEMBL cdna:SNAP chromosome:CEL140:I:5508575:5515830:1 11/11 None
GENEFINDER00000013466 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5514672:5515830:1 11/11 None
F59A3.2a ENSEMBL cdna:known chromosome:CEL140:I:5512051:5515830:1 gene:F59A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
186575 2 1 NM_059216 183688_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5512065-5515830(+) 100.0 100.0
Public Domain and Genome References
Ensembl F59A3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37819 Hypothetical protein F59A3.2a [Caenorhabditis elegans] ref|NP_491617.1| F59A3.2a [Caenorhabditis elegans] 0.0
blast AAO12417 Hypothetical protein F59A3.2b [Caenorhabditis elegans] ref|NP_871839.1| F59A3.2b [Caenorhabditis elegans] 0.0
blast AAB37819 Hypothetical protein F59A3.2a [Caenorhabditis elegans] ref|NP_491617.1| F59A3.2a [Caenorhabditis elegans] 1.0E-168
blast CAE67076 Hypothetical protein CBG12485 [Caenorhabditis briggsae] 4.0E-71
blast CAE67076 Hypothetical protein CBG12485 [Caenorhabditis briggsae] 8.0E-70
Sequence
Target Sequence 
>C. ELEGANS:183688_AT
tggaatgtcctccatgattcttcgcgacatttatcactgccacgttacggaaacaagctt
cttggaagaaggatcacttttatcaaagaattgcttcaaatatgtctttcgtgttgcttt
ccttcttttcaatgactcaatcggcgaatatattcttggtcggaaggagaagttgtgcta
tgaaatgctcgcttctcgattggtttacttttatactcgactggctgctgacacttggag
aattcttgttgttcgcaatggaccgaaagtagagacggagtggtacatgatgcgtggcgt
acagttgcgagatgagatcccggcaagttcgaatcaagactccaaactgacccagctcca
aaaaaacaacaacaatgacccaatcagtcaacagagacctcaactcagctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATGTCCTCCATGATTCTTCGC 327 547 2499 Antisense
TTCTTCGCGACATTTATCACTGCCA 113 691 2516 Antisense
AAATATGTCTTTCGTGTTGCTTTCC 94 117 2596 Antisense
GTGCTATGAAATGCTCGCTTCTCGA 674 477 2673 Antisense
TCGCTTCTCGATTGGTTTACTTTTA 269 599 2687 Antisense
TTACTTTTATACTCGACTGGCTGCT 344 683 2703 Antisense
ACTGGCTGCTGACACTTGGAGAATT 361 97 2718 Antisense
GATGCGTGGCGTACAGTTGCGAGAT 644 413 2787 Antisense
GATGAGATCCCGGCAAGTTCGAATC 293 411 2809 Antisense
GAATCAAGACTCCAAACTGACCCAG 451 325 2829 Antisense
GTCAACAGAGACCTCAACTCAGCTT 675 463 2885 Antisense
Sequence Source Affymetrix Proprietary Database