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[183687_at]

Description W03A5.4 /REP_DB=WormBase Gene ID /WP=CE01422 /TR=Q23138 /GB=AAA50730.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 136.8
(3)
A 		87.3
(-3)
M 		104.6
(-0.9)
P 		131.7
(2.4)
P 		50
B 146.8
(3)
P 		133.3
(0.3)
A 		117.1
(-3)
M 		137.5
(1.1)
P 		30
C 101.9
(-1.4)
A 		95.7
(-3)
A 		97
(-2.7)
M 		119.6
(3)
P 		24
avr 128.5
(2.7) 		105.4
(-3) 		106.2
(-2.8) 		129.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 60.1
(-1.2)
A 		98.3
(2.6)
P 		89
(1.7)
P 		41.6
(-3)
A 		102
(3)
A 		101.8
(3)
P 		60
B 76.8
(0.4)
A 		90.8
(1.2)
A 		46.7
(-1.2)
A 		75.6
(0.4)
A 		15.1
(-3)
A 		123
(3)
P 		108
C 91.4
(-0.3)
A 		92.6
(-0.1)
P 		76.7
(-3)
A 		80.9
(-2.2)
A 		95.3
(0.4)
A 		109.5
(3)
P 		33
avr 76.1
(-1.7) 		93.9
(0.7) 		70.8
(-2.4) 		66
(-3) 		70.8
(-2.4) 		111.4
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 49.8
(3)
A 		19
(-3)
M 		27.4
(-1.4)
P 		19.3
(-2.9)
P 		31
B 46.8
(3)
P 		32.9
(-1.2)
A 		27.1
(-3)
M 		29.3
(-2.3)
P 		20
C 33.7
(3)
A 		27.5
(0.2)
A 		33.8
(3)
M 		20.2
(-3)
P 		14
avr 43.4
(3) 		26.5
(-1.9) 		29.4
(-1.1) 		22.9
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 11.1
(-2.9)
A 		34.9
(3)
P 		19.4
(-0.8)
P 		10.6
(-3)
A 		30.8
(2)
A 		24.8
(0.5)
P 		24
B 26.7
(0.1)
A 		30.2
(0.6)
A 		11.3
(-2.2)
A 		20
(-0.9)
A 		6.1
(-3)
A 		45.9
(3)
P 		40
C 33.9
(2.2)
A 		28.3
(0.5)
P 		19.5
(-2.1)
A 		16.3
(-3)
A 		30.8
(1.3)
A 		36.7
(3)
P 		20
avr 23.9
(-0.5) 		31.1
(1.6) 		16.7
(-2.7) 		15.6
(-3) 		22.6
(-0.9) 		35.8
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183687_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6554
Sequence Type Exemplar sequence
Representative Public ID W03A5.4 NCBI
Target Description W03A5.4 /REP_DB=WormBase Gene ID /WP=CE01422 /TR=Q23138 /GB=AAA50730.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065755(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065755 NCBI Caenorhabditis elegans W03A5.4 (W03A5.4) mRNA, complete cds. 11/11 None
SNAP00000014243 ENSEMBL cdna:SNAP chromosome:CEL140:III:5431934:5434144:-1 11/11 None
GENEFINDER00000014246 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5431934:5439908:-1 11/11 None
W03A5.4.1 ENSEMBL cdna:known chromosome:CEL140:III:5431363:5434423:-1 gene:W03A5.4 11/11 None
W03A5.4.2 ENSEMBL cdna:known chromosome:CEL140:III:5431934:5434205:-1 gene:W03A5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5431932-5434143(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03A5.4
Entrez Gene 175746 Entrez gene
SwissProt Q23138 EMBL-EBI
WormBase CE01422 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50730 Hypothetical protein W03A5.4 [Caenorhabditis elegans] ref|NP_498156.1| W03A5.4 [Caenorhabditis elegans] 1.0E-154
blast AAA50730 Hypothetical protein W03A5.4 [Caenorhabditis elegans] ref|NP_498156.1| W03A5.4 [Caenorhabditis elegans] 1.0E-153
blast CAE61338 Hypothetical protein CBG05177 [Caenorhabditis briggsae] 1.0E-117
blast CAE61338 Hypothetical protein CBG05177 [Caenorhabditis briggsae] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:183687_AT
gtaacaactacatcaacaccatcaaatggacatgaattccaattacttcatgataaagtg
aaagctcagttacagacaaaaatgaatgcggcgagcaccgatttggagcacgccgatgat
tatccagagaaatgttcggattcattgagagccgctcatggaaatgcacatttgttggtt
aggaagaagttctccaagtttaatgaacttattggaaaaaatttgaacccaattgccgat
gatccgatgccagttaccgtacaggatcttgaaggattctgggttacaattgatatggaa
ttgaaaggaattttaaaagaattcacgaaagttgaacaatacagagcagccaactgggat
ccttcagctgtaaaggaagaagaagaaatcgattcgacaacaaatcgaccaccgattgct
ccaaagacgagacccgtgactgcgaaaaagaaggcaccgattgtttcagaggagacgagg
aagaagctcgccgagcagaaagcacttgctgagcaacgaagagccgaaatgcgtgcacag
attcttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACAACTACATCAACACCATCAA 638 461 334 Antisense
CGGCGAGCACCGATTTGGAGCACGC 273 241 422 Antisense
GGAGCACGCCGATGATTATCCAGAG 709 519 438 Antisense
CGGATTCATTGAGAGCCGCTCATGG 694 243 470 Antisense
TTGAACCCAATTGCCGATGATCCGA 83 701 556 Antisense
TGATCCGATGCCAGTTACCGTACAG 350 565 573 Antisense
ACAGAGCAGCCAACTGGGATCCTTC 368 105 674 Antisense
ACAAATCGACCACCGATTGCTCCAA 600 111 733 Antisense
GACGAGACCCGTGACTGCGAAAAAG 559 377 759 Antisense
AGGCACCGATTGTTTCAGAGGAGAC 208 55 785 Antisense
GAAATGCGTGCACAGATTCTTCAAA 66 363 859 Antisense
Sequence Source Affymetrix Proprietary Database