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[183684_at]

Description K03E5.1 /REP_DB=WormBase Gene ID /WP=CE18007 /TR=O61849 /GB=AAC17565.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 30      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 208.6
(3)
P 		134.7
(0.3)
A 		43.8
(-3)
A 		132
(0.2)
P 		165
B 209.2
(3)
P 		84.2
(-1.7)
A 		50.6
(-3)
A 		81
(-1.8)
A 		159
C 260.4
(3)
P 		24.2
(-3)
A 		37.2
(-2.7)
A 		188.2
(1.2)
P 		236
avr 226.1
(3) 		81
(-1.8) 		43.9
(-3) 		133.7
(-0) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 37.1
(-2.9)
A 		129.7
(3)
A 		120.8
(2.4)
P 		49.2
(-2.1)
A 		35.3
(-3)
A 		47.3
(-2.2)
A 		94
B 134.7
(3)
P 		95.3
(0.7)
A 		123
(2.3)
P 		113.2
(1.8)
A 		50.2
(-1.9)
A 		31.5
(-3)
A 		103
C 134.8
(3)
A 		130.9
(2.7)
M 		70.5
(-1.6)
A 		82.2
(-0.8)
A 		68.2
(-1.8)
A 		51.1
(-3)
A 		84
avr 102.2
(1.7) 		118.6
(3) 		104.8
(1.9) 		81.5
(0) 		51.2
(-2.4) 		43.3
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 76
(3)
P 		29.2
(-1.3)
A 		11.4
(-3)
A 		19.3
(-2.3)
P 		65
B 66.7
(3)
P 		20.8
(-2)
A 		11.7
(-3)
A 		17.3
(-2.4)
A 		55
C 86.2
(3)
P 		7
(-3)
A 		13
(-2.5)
A 		31.7
(-1.1)
P 		79
avr 76.3
(3) 		19
(-2.3) 		12
(-3) 		22.8
(-2) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 6.8
(-3)
A 		46.1
(3)
A 		26.3
(-0)
P 		12.5
(-2.1)
A 		10.6
(-2.4)
A 		11.5
(-2.3)
A 		39
B 46.9
(3)
P 		31.7
(0.4)
A 		29.9
(0.1)
P 		30
(0.1)
A 		20.4
(-1.5)
A 		11.7
(-3)
A 		35
C 50
(3)
A 		39.9
(1.2)
M 		17.9
(-2.7)
A 		16.5
(-3)
A 		22.1
(-2)
A 		17.1
(-2.9)
A 		34
avr 34.6
(1.9) 		39.2
(3) 		24.7
(-0.4) 		19.7
(-1.5) 		17.7
(-2) 		13.4
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.119
Sequence Type Exemplar sequence
Representative Public ID K03E5.1 NCBI
Target Description K03E5.1 /REP_DB=WormBase Gene ID /WP=CE18007 /TR=O61849 /GB=AAC17565.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058758 NCBI Caenorhabditis elegans K03E5.1 (K03E5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000035358 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3429791:3431951:1 11/11 None
K03E5.1 ENSEMBL cdna:known chromosome:CEL140:I:3429605:3431965:1 gene:K03E5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035355 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3429604-3431965(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03E5.1
Entrez Gene 186950 Entrez gene
SwissProt O61849 EMBL-EBI
WormBase CE18007 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629293_AT dm
DROSGENOME1:145010_AT dm
DROSGENOME1:145011_AT dm
DROSGENOME1:142267_AT dm
Protein Similarities
Method ID Description E-Value
blast AAC17565 Hypothetical protein K03E5.1 [Caenorhabditis elegans] ref|NP_491159.1| K03E5.1 [Caenorhabditis elegans] 0.0
blast AAC17565 Hypothetical protein K03E5.1 [Caenorhabditis elegans] ref|NP_491159.1| K03E5.1 [Caenorhabditis elegans] 1.0E-162
blast CAE68973 Hypothetical protein CBG14955 [Caenorhabditis briggsae] 1.0E-123
blast CAE68973 Hypothetical protein CBG14955 [Caenorhabditis briggsae] 1.0E-122
blast XP_414109 PREDICTED: similar to neuropilin- and tolloid-like protein 2 precursor [Gallus gallus] 2.0E-32
blast XP_414109 PREDICTED: similar to neuropilin- and tolloid-like protein 2 precursor [Gallus gallus] 3.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000859 EMBL-EBI CUB 6.4E-26
Pfam IPR000859 EMBL-EBI CUB 3.8E-10
Pfam IPR000859 EMBL-EBI CUB 6.4E-26
Pfam IPR000859 EMBL-EBI CUB 3.8E-10
Sequence
Target Sequence 
>C. ELEGANS:183684_AT
atagacgctggcgaggagtgcccgaatgattttattgaatttcgtgatggccgatacggg
ttctctccgctcatcgctcgtttctgtggcgaccgaatgccgaaacgagaaattcgagca
gtttcgggtttcttatggatccgttttcggtcagactctatgctagaatatcaaggtttt
tctgcagaatatgcgattgttccaagtaaaactggacgatttaataatcatgaatgtctt
ctagaatatttaaatggattggatggatttatccgaacaaaagatctaatttcaaacctt
ccaagaaatgcatcgggaaccttggactgtgtatggcggttggcggttccgaataacttt
cgaattgcattttacgtaaaggaattcgcgttgactgctccgaatcaatgtgctcataat
tttgtagaagtttactcgggagacacttcaaataaaccattgagacgattctgtggtctt
acggcgaatgacgtgttctccccgtcgaatgaaatgttcgttcggttctatttatcggat
gttcgaagtctcaacacaacttccatatcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGACGCTGGCGAGGAGTGCCCGA 195 23 370 Antisense
CGTGATGGCCGATACGGGTTCTCTC 90 243 412 Antisense
GTTTCTGTGGCGACCGAATGCCGAA 193 451 449 Antisense
GAGCAGTTTCGGGTTTCTTATGGAT 488 381 485 Antisense
ATGGATCCGTTTTCGGTCAGACTCT 7 53 504 Antisense
ATGCATCGGGAACCTTGGACTGTGT 494 35 677 Antisense
GACTGTGTATGGCGGTTGGCGGTTC 446 375 694 Antisense
AAAGGAATTCGCGTTGACTGCTCCG 400 121 747 Antisense
GACTGCTCCGAATCAATGTGCTCAT 547 375 762 Antisense
TTACGGCGAATGACGTGTTCTCCCC 489 683 848 Antisense
GTCTCAACACAACTTCCATATCAGC 691 469 917 Antisense
Sequence Source Affymetrix Proprietary Database