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[183683_at]

Description Y50E8A.3 /REP_DB=WormBase Gene ID /WP=CE22305 /TR=Q9NAF4 /GB=CAB55046.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 14      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 12      6grp_total > 03      4grp_total > 14      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2398
1 2 3 4 range
A 2432.7
(1.5)
P 		1212.5
(-1.6)
P 		643.4
(-3)
P 		3040.9
(3)
P 		2398
B 2089.5
(0.5)
P 		964.5
(-2.6)
P 		801.9
(-3)
P 		3036
(3)
P 		2234
C 2428.3
(2.9)
P 		1082.2
(-1.8)
P 		756
(-3)
P 		2452.3
(3)
P 		1696
avr 2316.8
(1.5) 		1086.4
(-2) 		733.8
(-3) 		2843.1
(3) 		2109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2319
1 2 3 4 5 6 range
A 2381.3
(3)
P 		2264.2
(2.6)
P 		1811.4
(1)
P 		2374.5
(3)
P 		1922.2
(1.4)
P 		710.7
(-3)
P 		1671
B 2862.5
(3)
P 		2494.3
(2)
P 		2237
(1.4)
P 		2402.1
(1.8)
P 		2178.1
(1.2)
P 		586.4
(-3)
P 		2276
C 2905.6
(3)
P 		2270
(1.3)
P 		1849.8
(0.1)
P 		2284.5
(1.3)
P 		2258.9
(1.2)
P 		705.4
(-3)
P 		2200
avr 2716.5
(3) 		2342.8
(1.9) 		1966.1
(0.8) 		2353.7
(1.9) 		2119.7
(1.3) 		667.5
(-3) 		2049
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 718
1 2 3 4 range
A 885.7
(3)
P 		263.2
(-2.2)
P 		168.2
(-3)
P 		445.1
(-0.7)
P 		718
B 666.3
(3)
P 		238.2
(-2.3)
P 		185.8
(-3)
P 		647
(2.8)
P 		481
C 803.8
(3)
P 		311.1
(-2.5)
P 		263.5
(-3)
P 		413.5
(-1.3)
P 		540
avr 785.3
(3) 		270.8
(-2.3) 		205.8
(-3) 		501.9
(0.1) 		580

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 904
1 2 3 4 5 6 range
A 439
(-0.5)
P 		805.3
(3)
P 		394.5
(-0.9)
P 		602.2
(1.1)
P 		580
(0.9)
P 		173
(-3)
P 		632
B 996
(3)
P 		830.2
(1.7)
P 		543.2
(-0.5)
P 		636.2
(0.2)
P 		884.9
(2.1)
P 		218.7
(-3)
P 		777
C 1077
(3)
P 		692.7
(0.3)
P 		470.8
(-1.3)
P 		459.4
(-1.4)
P 		730.9
(0.5)
P 		236.1
(-3)
P 		841
avr 837.3
(3) 		776.1
(2.4) 		469.5
(-0.5) 		565.9
(0.4) 		731.9
(2) 		209.3
(-3) 		628
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14397
Sequence Type Exemplar sequence
Representative Public ID Y50E8A.3 NCBI
Target Description Y50E8A.3 /REP_DB=WormBase Gene ID /WP=CE22305 /TR=Q9NAF4 /GB=CAB55046.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074236(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074236 NCBI Caenorhabditis elegans One IG domain family member (oig-3) (oig-3) mRNA, complete cds. 11/11 None
SNAP00000008978 ENSEMBL cdna:SNAP chromosome:CEL140:V:14732246:14733667:1 9/11 None
GENEFINDER00000009979 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14732246:14733667:1 11/11 None
Y50E8A.3 ENSEMBL cdna:known chromosome:CEL140:V:14732246:14733667:1 gene:Y50E8A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14732245-14733667(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol oig-3
Ensembl Y50E8A.3
Entrez Gene 190105 Entrez gene
SwissProt Q9NAF4 EMBL-EBI
WormBase CE22305 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55046 Hypothetical protein Y50E8A.3 [Caenorhabditis elegans] ref|NP_506637.1| One IG domain family member (oig-3) [Caenorhabditis elegans] 3.0E-77
blast CAE60840 Hypothetical protein CBG04549 [Caenorhabditis briggsae] 8.0E-75
blast CAB55046 Hypothetical protein Y50E8A.3 [Caenorhabditis elegans] ref|NP_506637.1| One IG domain family member (oig-3) [Caenorhabditis elegans] 8.0E-55
blast CAE60840 Hypothetical protein CBG04549 [Caenorhabditis briggsae] 2.0E-52
blast XP_623653 PREDICTED: similar to zormin [Apis mellifera] 4.0E-10
Sequence
Target Sequence 
>C. ELEGANS:183683_AT
caaccaccacaacgtcagtacagtagtacgttaaacgtggattgtgtcgatggagtctac
agatctcaacaacaggtgtcaccgttgacaaagcaagtaaaccacctcgcctatgaaatc
ccaaaaaacaagtacgccaacaatccatggaattatgctcctgaatttttgaaggttttc
ggtgaccttcgtgttcatatcggaggaaaagctgtattcgattgtgttctactaggaagc
cctcgaccacgagtgtgctggttgtttaacgaagacaaattgcgcttcagtgacgtcata
attgaggatactgctgacgtgtgccgcctcacaattccatacgttcaaatgcaccatttc
ggaactttcactgtcttgtgcgaaaacgaggtgggacgtgccaccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCACCACAACGTCAGTACAGTA 673 185 31 Antisense
GATCTCAACAACAGGTGTCACCGTT 345 417 92 Antisense
ACAAAGCAAGTAAACCACCTCGCCT 511 109 118 Antisense
CACCTCGCCTATGAAATCCCAAAAA 650 201 133 Antisense
GTGACCTTCGTGTTCATATCGGAGG 258 483 212 Antisense
TGTGTTCTACTAGGAAGCCCTCGAC 420 555 253 Antisense
CCCTCGACCACGAGTGTGCTGGTTG 627 259 270 Antisense
TGAGGATACTGCTGACGTGTGCCGC 702 567 333 Antisense
AATTCCATACGTTCAAATGCACCAT 681 177 363 Antisense
GCACCATTTCGGAACTTTCACTGTC 13 315 381 Antisense
AAACGAGGTGGGACGTGCCACCGCT 127 127 414 Antisense
Sequence Source Affymetrix Proprietary Database