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[183682_at]

Description F37C4.8 /REP_DB=WormBase Gene ID /WP=CE17051 /TR=O61197 /GB=AAB95174.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.5
(-3)
A 		14.3
(3)
A 		5.3
(-1.2)
A 		10.3
(1.1)
A 		13
B 6
(-3)
A 		19.8
(3)
A 		6.5
(-2.8)
A 		10.3
(-1.1)
A 		14
C 5.4
(-3)
A 		11.2
(2)
A 		12.4
(3)
A 		6.1
(-2.4)
A 		7
avr 4.3
(-3) 		15.1
(3) 		8.1
(-0.9) 		8.9
(-0.4) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 8.9
(-0.2)
A 		3.3
(-3)
A 		8
(-0.7)
A 		10.2
(0.4)
A 		15.5
(3)
A 		11.3
(0.9)
A 		12
B 12.4
(-0.4)
A 		1.6
(-3)
A 		26.6
(3)
A 		7.8
(-1.5)
A 		7.3
(-1.6)
A 		5
(-2.2)
A 		25
C 2.7
(-3)
A 		9
(-1.5)
A 		7.8
(-1.8)
A 		16.4
(0.3)
A 		27.5
(3)
A 		13.2
(-0.5)
A 		25
avr 8
(-1.3) 		4.6
(-3) 		14.1
(1.7) 		11.5
(0.4) 		16.8
(3) 		9.8
(-0.4) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.5
(-3)
A 		3.1
(3)
A 		1.4
(-0.9)
A 		1.5
(-0.7)
A 		3
B 1.9
(-2.3)
A 		4.9
(3)
A 		1.5
(-3)
A 		2.2
(-1.8)
A 		3
C 1.8
(-1.5)
A 		3.2
(1)
A 		4.3
(3)
A 		1
(-3)
A 		3
avr 1.4
(-3) 		3.7
(3) 		2.4
(-0.4) 		1.6
(-2.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.6
(-2.3)
A 		1.2
(-3)
A 		1.7
(-2.1)
A 		2.6
(-0.6)
A 		4.7
(3)
A 		2.7
(-0.4)
A 		4
B 4.3
(0.8)
A 		0.5
(-3)
A 		6.5
(3)
A 		2.1
(-1.4)
A 		3
(-0.5)
A 		1.9
(-1.6)
A 		6
C 1
(-3)
A 		2.7
(-1.7)
A 		2
(-2.2)
A 		3.3
(-1.3)
A 		8.9
(3)
A 		4.4
(-0.4)
A 		8
avr 2.3
(-1.8) 		1.5
(-3) 		3.4
(-0.2) 		2.7
(-1.2) 		5.5
(3) 		3
(-0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11118
Sequence Type Exemplar sequence
Representative Public ID F37C4.8 NCBI
Target Description F37C4.8 /REP_DB=WormBase Gene ID /WP=CE17051 /TR=O61197 /GB=AAB95174.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068029 NCBI Caenorhabditis elegans F37C4.8 (F37C4.8) mRNA, complete cds. 11/11 None
SNAP00000038136 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3878746:3881181:-1 11/11 None
GENEFINDER00000038144 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3878536:3881135:-1 11/11 None
F37C4.8 ENSEMBL cdna:known chromosome:CEL140:IV:3879311:3881181:-1 gene:F37C4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001748 2/11 Cross Hyb Matching Probes None
SNAP00000001734 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3879316-3881187(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37C4.8
Entrez Gene 185421 Entrez gene
SwissProt O61197 EMBL-EBI
WormBase CE17051 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95174 Hypothetical protein F37C4.8 [Caenorhabditis elegans] ref|NP_500430.1| F37C4.8 [Caenorhabditis elegans] 1.0E-166
blast AAB95174 Hypothetical protein F37C4.8 [Caenorhabditis elegans] ref|NP_500430.1| F37C4.8 [Caenorhabditis elegans] 1.0E-164
blast AAB95174 Hypothetical protein F37C4.8 [Caenorhabditis elegans] ref|NP_500430.1| F37C4.8 [Caenorhabditis elegans] 1.0E-155
blast CAE65668 Hypothetical protein CBG10734 [Caenorhabditis briggsae] 2.0E-92
blast CAE65668 Hypothetical protein CBG10734 [Caenorhabditis briggsae] 2.0E-90
blast CAE65668 Hypothetical protein CBG10734 [Caenorhabditis briggsae] 6.0E-77
blast AAB95173 Hypothetical protein F37C4.7 [Caenorhabditis elegans] ref|NP_500429.1| F37C4.7 [Caenorhabditis elegans] 6.0E-20
Sequence
Target Sequence 
>C. ELEGANS:183682_AT
gtatcagcagtatcaccgatgacctagaaaagagtagaatcgcactgaccaaaaagctca
aggtccctcctgagacactagaggtgtttcaggcaaaagattgcgcgcagcacagtcaga
agttggattgttgggaactagcaaaatgcctttataactccacggagatgctcccagaga
aggaggtgacgaatgtcgaggagcgagatgtctgtgagaacgcgtcgatcttggttctcc
gtgacgcttacaatatcctgagcctaatgccggagcagttgtacagactgcaaattgatc
ggaaaattggtgatgggaatatagtagatgcgaatttcacgtacaatgggaagcctgtgg
agaagttgaagcgcgttaaagattgtgagcatcagccgaagaggattaactcgaacaaaa
ttttcctcgatccaaaactgagaaggtcgtccttcccacgacagaaaatgtcaaactgct
acaaaatctatattttctcgacggaggccgtcgcacatccactttcctcgaaagaagcag
tcggacatcgcactttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCAGCAGTATCACCGATGACCT 309 445 377 Antisense
AGGTCCCTCCTGAGACACTAGAGGT 34 59 437 Antisense
GATTGCGCGCAGCACAGTCAGAAGT 170 433 475 Antisense
GCAAAATGCCTTTATAACTCCACGG 471 317 517 Antisense
AACTCCACGGAGATGCTCCCAGAGA 126 141 532 Antisense
GATGTCTGTGAGAACGCGTCGATCT 384 409 583 Antisense
TTCTCCGTGACGCTTACAATATCCT 235 687 611 Antisense
ATATCCTGAGCCTAATGCCGGAGCA 76 21 629 Antisense
AACTGAGAAGGTCGTCCTTCCCACG 135 143 812 Antisense
CTATATTTTCTCGACGGAGGCCGTC 585 211 864 Antisense
AGAAGCAGTCGGACATCGCACTTTC 521 73 909 Antisense
Sequence Source Affymetrix Proprietary Database