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[183681_s_at]

Description M03C11.7 /REP_DB=WormBase Gene ID /WP=CE03498 /TR=Q21486 /GB=CAA88957.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 82      6grp_total > 45      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 394
(-0.4)
P 		349
(-3)
P 		377
(-1.4)
P 		452.1
(3)
P 		103
B 467.6
(0.1)
P 		482.3
(0.7)
P 		392.6
(-3)
P 		539.6
(3)
P 		147
C 452.9
(0.7)
P 		321.8
(-3)
P 		438.3
(0.3)
P 		535.2
(3)
P 		213
avr 438.2
(-0.4) 		384.4
(-3) 		402.6
(-2.1) 		509
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 387
(-0.8)
P 		559.8
(3)
P 		384.3
(-0.8)
P 		285.6
(-3)
P 		283.9
(-3)
P 		418.9
(-0.1)
P 		276
B 419.6
(1.4)
P 		423.3
(1.5)
P 		368.5
(-0.6)
P 		306.9
(-3)
P 		320.6
(-2.5)
P 		460.6
(3)
P 		154
C 416.3
(2.1)
P 		426.6
(2.3)
P 		460.2
(3)
P 		164.4
(-3)
P 		246.5
(-1.3)
P 		431.4
(2.4)
P 		296
avr 407.6
(1.3) 		469.9
(3) 		404.3
(1.2) 		252.3
(-3) 		283.7
(-2.1) 		437
(2.1) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 143.4
(3)
P 		75.8
(-2.3)
P 		98.6
(-0.5)
P 		66.2
(-3)
P 		77
B 149.1
(3)
P 		119.1
(-0.1)
P 		91
(-3)
P 		115
(-0.5)
P 		58
C 149.9
(2.7)
P 		92.5
(-2.8)
P 		152.8
(3)
P 		90.2
(-3)
P 		63
avr 147.5
(3) 		95.8
(-2.4) 		114.1
(-0.5) 		90.5
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 71.3
(-3)
P 		199.1
(3)
P 		83.7
(-2.4)
P 		72.4
(-2.9)
P 		85.7
(-2.3)
P 		102
(-1.6)
P 		128
B 146
(1.3)
P 		140.9
(1)
P 		89.5
(-2.5)
P 		81.3
(-3)
P 		130.3
(0.2)
P 		171.8
(3)
P 		91
C 154.3
(3)
P 		130.2
(1.8)
P 		117.1
(1.2)
P 		33.1
(-3)
P 		79.8
(-0.7)
P 		144.4
(2.5)
P 		121
avr 123.9
(0.9) 		156.7
(3) 		96.8
(-0.8) 		62.3
(-3) 		98.6
(-0.7) 		139.4
(1.9) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183681_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7387
Sequence Type Exemplar sequence
Representative Public ID M03C11.7 NCBI
Target Description M03C11.7 /REP_DB=WormBase Gene ID /WP=CE03498 /TR=Q21486 /GB=CAA88957.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066899(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066899 NCBI Caenorhabditis elegans M03C11.7 (M03C11.7) mRNA, complete cds. 11/11 None
SNAP00000000520 ENSEMBL cdna:SNAP chromosome:CEL140:III:10424104:10427865:-1 11/11 None
GENEFINDER00000000552 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10424104:10427865:-1 11/11 None
M03C11.7.1 ENSEMBL cdna:known chromosome:CEL140:III:10424019:10427867:-1 gene:M03C11.7 11/11 None
M03C11.7.2 ENSEMBL cdna:known chromosome:CEL140:III:10424020:10427865:-1 gene:M03C11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10424099-10427861(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03C11.7
Entrez Gene 176461 Entrez gene
SwissProt Q21486 EMBL-EBI
WormBase CE03498 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584992_AT similar to U4/U6 small nuclear ribonucleoprotein Prp3 (Pre-mRNA splicing factor 3) (U4/U6 snRNP 90 kDa protein) (hPrp3) cfa
CANINE_2:CFA.10025.1.A1_S_AT similar to U4/U6 small nuclear ribonucleoprotein Prp3 (Pre-mRNA splicing factor 3) (U4/U6 snRNP 90 kDa protein) (hPrp3) cfa
CANINE_2:CFA.18780.1.S1_S_AT similar to U4/U6 small nuclear ribonucleoprotein Prp3 (Pre-mRNA splicing factor 3) (U4/U6 snRNP 90 kDa protein) (hPrp3) cfa
DROSOPHILA_2:1641669_A_AT dm
DROSGENOME1:149076_AT dm
CHICKEN:GGAAFFX.12652.1.S1_S_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) gga
HG-U133_PLUS_2:202251_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) hs
HG-FOCUS:202251_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) hs
HG-U133A:202251_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) hs
HG-U133A_2:202251_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) hs
HU35KSUBA:RC_AA610089_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) hs
U133_X3P:G4758555_3P_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) hs
HG-U95AV2:39053_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) hs
MOUSE430A_2:1424314_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) mm
MOE430A:1424314_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) mm
MOUSE430_2:1424314_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) mm
MG-U74BV2:163951_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) mm
MG-U74CV2:136100_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (Prpf3), mRNA mm
MOE430B:1457390_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (Prpf3), mRNA mm
MOUSE430_2:1457390_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (Prpf3), mRNA mm
MU19KSUBA:TC17153_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (Prpf3), mRNA mm
RG-U34A:RC_AA891890_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (predicted) rn
RG-U34C:RC_AI073249_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (predicted) rn
RG-U34C:RC_AI072539_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (predicted) rn
RAE230A:1393985_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (predicted) rn
RAT230_2:1393985_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (predicted) rn
RAE230A:1384404_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (predicted) rn
RAT230_2:1384404_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (predicted) rn
RAE230A:1372432_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (predicted) rn
RAT230_2:1372432_AT PRP3 pre-mRNA processing factor 3 homolog (yeast) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA88957 Hypothetical protein M03C11.7 [Caenorhabditis elegans] ref|NP_499300.1| M03C11.7 [Caenorhabditis elegans] 0.0
blast CAE71471 Hypothetical protein CBG18389 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183681_S_AT
agcaatccaggatccgacgaaaatggaagcacaagttcggaaacaaatggctgaaagatt
gaagaaacatgagacattgaatgctgagagaaagcttaccgaagatcagaaacgcgcgaa
aaagacgaaaaaactgtctgaggatacgtcgacggcggttaatgtttcggtttatagagt
aaaatcactggcccatccgtcgaaaaagttcaaagtggagacaaatgcgaaacaattaca
aatgagtggagcaattatgatgcataaagctcaaaatgtgattgttgtggaaggtggtcc
aaaacaacagaaattctataaaaatctgatgattaatcgaatcaagtggtctgatgagat
tattggacaaaagaaagacgctgaaaaagatgctcccggagaaagaaatctatgtgaaat
gatctgggaaggacaagtgaagcgtcgaaatttccgtgatttcaccgttcacacggctac
acttgagaagcaggctcgcgagtttttcgaaaagcacggagttgcacaatactgggatct
ctgttacagtaccaccgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAATCCAGGATCCGACGAAAATG 510 75 1284 Antisense
GCTTACCGAAGATCAGAAACGCGCG 77 305 1377 Antisense
GATACGTCGACGGCGGTTAATGTTT 488 423 1426 Antisense
TAGAGTAAAATCACTGGCCCATCCG 29 653 1458 Antisense
CTGGCCCATCCGTCGAAAAAGTTCA 504 239 1471 Antisense
GACGCTGAAAAAGATGCTCCCGGAG 471 379 1660 Antisense
ATTTCCGTGATTTCACCGTTCACAC 445 17 1733 Antisense
CGTTCACACGGCTACACTTGAGAAG 140 247 1749 Antisense
GAAGCAGGCTCGCGAGTTTTTCGAA 389 341 1770 Antisense
GTTGCACAATACTGGGATCTCTGTT 488 439 1804 Antisense
GATCTCTGTTACAGTACCACCGTTC 154 417 1819 Antisense
Sequence Source Affymetrix Proprietary Database