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[183680_at]

Description T10E9.1 /REP_DB=WormBase Gene ID /WP=CE13543 /TR=O01606 /GB=AAB52469.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 93      6grp_total > 75      4grp_total > 22      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 369.7
(1.9)
P 		303.8
(-0.3)
P 		226.3
(-3)
P 		400.8
(3)
P 		175
B 451.8
(3)
P 		291.7
(-3)
P 		305.5
(-2.5)
P 		424.5
(2)
P 		160
C 398.4
(3)
P 		333.2
(-0.5)
P 		286.5
(-3)
P 		360
(0.9)
P 		112
avr 406.6
(3) 		309.6
(-1.3) 		272.8
(-3) 		395.1
(2.5) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 549
1 2 3 4 5 6 range
A 225.5
(-3)
P 		354.4
(-1.6)
P 		426.5
(-0.8)
P 		585.4
(1)
P 		546.1
(0.5)
P 		769.4
(3)
P 		544
B 238.8
(-3)
P 		293.1
(-2.2)
P 		429.4
(-0.3)
P 		418.6
(-0.5)
P 		456.2
(0.1)
P 		662.7
(3)
P 		424
C 220.4
(-3)
P 		302.2
(-2)
P 		464.1
(-0.1)
P 		672.3
(2.4)
P 		480
(0.1)
P 		718.4
(3)
P 		498
avr 228.2
(-3) 		316.6
(-1.9) 		440
(-0.4) 		558.8
(1.1) 		494.1
(0.3) 		716.8
(3) 		489
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 134.6
(3)
P 		65.9
(-2.4)
P 		59.2
(-3)
P 		58.7
(-3)
P 		76
B 144.1
(3)
P 		72
(-2.9)
P 		70.8
(-3)
P 		90.5
(-1.4)
P 		73
C 131.9
(3)
P 		95.8
(-0)
P 		99.8
(0.3)
P 		60.7
(-3)
P 		71
avr 136.9
(3) 		77.9
(-2.3) 		76.6
(-2.4) 		70
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 41.6
(-3)
P 		126.1
(0.5)
P 		92.9
(-0.9)
P 		148.5
(1.4)
P 		164.8
(2.1)
P 		187.3
(3)
P 		146
B 83.1
(-3)
P 		97.6
(-2.5)
P 		104.3
(-2.2)
P 		110.9
(-2)
P 		185.4
(0.7)
P 		247.1
(3)
P 		164
C 81.7
(-3)
P 		92.2
(-2.6)
P 		118.1
(-1.6)
P 		135.2
(-1)
P 		155.3
(-0.2)
P 		240.5
(3)
P 		159
avr 68.8
(-3) 		105.3
(-1.6) 		105.1
(-1.6) 		131.5
(-0.6) 		168.5
(0.8) 		225
(3) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2370
Sequence Type Exemplar sequence
Representative Public ID T10E9.1 NCBI
Target Description T10E9.1 /REP_DB=WormBase Gene ID /WP=CE13543 /TR=O01606 /GB=AAB52469.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059484(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059484 NCBI Caenorhabditis elegans T10E9.1 (T10E9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000043004 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6550302:6554629:1 11/11 None
SNAP00000042995 ENSEMBL cdna:SNAP chromosome:CEL140:I:6553398:6554629:1 11/11 None
T10E9.1 ENSEMBL cdna:known chromosome:CEL140:I:6553244:6554629:1 gene:T10E9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6553172-6554558(+) 90.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10E9.1
Entrez Gene 172366 Entrez gene
SwissProt O01606 EMBL-EBI
WormBase CE13543 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52469 Hypothetical protein T10E9.1 [Caenorhabditis elegans] ref|NP_491885.1| T10E9.1 [Caenorhabditis elegans] 0.0
blast AAB52470 Hypothetical protein T10E9.2 [Caenorhabditis elegans] ref|NP_491884.1| T10E9.2 [Caenorhabditis elegans] 0.0
blast CAE67228 Hypothetical protein CBG12667 [Caenorhabditis briggsae] 0.0
blast AAB52469 Hypothetical protein T10E9.1 [Caenorhabditis elegans] ref|NP_491885.1| T10E9.1 [Caenorhabditis elegans] 1.0E-178
blast CAE67227 Hypothetical protein CBG12666 [Caenorhabditis briggsae] 3.0E-49
blast CAE67227 Hypothetical protein CBG12666 [Caenorhabditis briggsae] 1.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.9E-9
Sequence
Target Sequence 
>C. ELEGANS:183680_AT
gacgatgatttcgattttctcgggaaaaatgcggcaattgtgcaaaaaatggacaaaatc
gagatctctactatcaccacagcaacctatgaagacgtcatggcactaaaagcgtcagtg
atctctctcaaatccaagaagtttactggtgaccttatttgtgacgtcatcgagaagttc
gtggctaccagatcaactggatcgaaacttgacatcatgaacccaagtggcctagatttt
gaaaatattcctgcaggatttacacaagttgagcaggactctggccacaatgtatatcac
aagcaacttccagatgatcaaagacttgtagttttatggaaaagtgagaattggattaat
ttagaaattggaaaaaccggaaattatgatttctcgcctagttttaagaaaattctactc
ggtctaccccatttcgctgacgattcttcggagtacgatgacaattatgatgattatgat
aacgatgaggatagcaattttgatcccgattatgactacgaacgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGATGATTTCGATTTTCTCGGGA 305 377 589 Antisense
AAATCGAGATCTCTACTATCACCAC 469 115 644 Antisense
CACCACAGCAACCTATGAAGACGTC 305 199 663 Antisense
AAAGCGTCAGTGATCTCTCTCAAAT 234 125 697 Antisense
TTACTGGTGACCTTATTTGTGACGT 307 681 731 Antisense
GAAGTTCGTGGCTACCAGATCAACT 355 337 762 Antisense
TGACATCATGAACCCAAGTGGCCTA 192 571 798 Antisense
GCAGGACTCTGGCCACAATGTATAT 443 311 861 Antisense
AATTATGATTTCTCGCCTAGTTTTA 325 175 970 Antisense
CCCATTTCGCTGACGATTCTTCGGA 214 259 1016 Antisense
GATCCCGATTATGACTACGAACGTT 202 417 1090 Antisense
Sequence Source Affymetrix Proprietary Database