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[183679_at]

Description Y56A3A.9 /REP_DB=WormBase Gene ID /WP=CE25498 /TR=Q9U215 /GB=CAB60526.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 9.4
(-1.7)
A 		11.3
(-1.2)
A 		28.8
(3)
A 		4
(-3)
A 		25
B 5.4
(-3)
A 		9.7
(-0.8)
A 		8.2
(-1.6)
A 		17.3
(3)
A 		12
C 4
(-3)
A 		22.9
(3)
A 		7.1
(-2)
A 		6.2
(-2.3)
A 		19
avr 6.3
(-3) 		14.6
(2.9) 		14.7
(3) 		9.2
(-0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.3
(-3)
A 		7.5
(-1.8)
A 		3.5
(-2.7)
A 		3.7
(-2.7)
A 		29
(3)
A 		22.1
(1.4)
A 		27
B 4.9
(-2.3)
A 		28.7
(3)
A 		1.9
(-3)
A 		8
(-1.6)
A 		9
(-1.4)
A 		17.3
(0.4)
A 		27
C 23.1
(1.2)
A 		31.6
(3)
A 		26.3
(1.9)
A 		3
(-3)
A 		5.1
(-2.6)
A 		4.2
(-2.7)
A 		29
avr 10.1
(-1.2) 		22.6
(3) 		10.6
(-1.1) 		4.9
(-3) 		14.4
(0.2) 		14.5
(0.3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.4
(-0.6)
A 		2.5
(-1.3)
A 		7.5
(3)
A 		0.6
(-3)
A 		7
B 1.7
(-3)
A 		2.4
(-0.9)
A 		1.9
(-2.4)
A 		3.7
(3)
A 		2
C 1.3
(-2.7)
A 		6.6
(3)
A 		2.5
(-1.4)
A 		1
(-3)
A 		6
avr 2.1
(-2.2) 		3.8
(2.5) 		4
(3) 		1.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.7
(-1.3)
A 		0.8
(-2.7)
A 		0.9
(-2.6)
A 		8.7
(3)
A 		5.4
(0.6)
A 		8
B 1.7
(-2.2)
A 		9.6
(3)
A 		0.5
(-3)
A 		2.1
(-1.9)
A 		3.7
(-0.9)
A 		6.4
(0.9)
A 		9
C 8.6
(2.3)
A 		9.6
(3)
A 		6.7
(1.1)
A 		0.6
(-3)
A 		1.6
(-2.3)
A 		1.4
(-2.5)
A 		9
avr 3.6
(-0.6) 		7.3
(3) 		2.7
(-1.5) 		1.2
(-3) 		4.7
(0.4) 		4.4
(0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183679_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6799
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.9 NCBI
Target Description Y56A3A.9 /REP_DB=WormBase Gene ID /WP=CE25498 /TR=Q9U215 /GB=CAB60526.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067140 NCBI Caenorhabditis elegans Y56A3A.9 (Y56A3A.9) mRNA, complete cds. 11/11 A 
GENEFINDER00000035230 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11883704:11884825:-1 11/11 None
Y56A3A.9 ENSEMBL cdna:known chromosome:CEL140:III:11883704:11884825:-1 gene:Y56A3A.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007401 7/11 Cross Hyb Matching Probes None
GENEFINDER00000007416 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10636030-10637863(+) 99.02 99.02
chrIII:11883699-11884821(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y56A3A.9
Entrez Gene 190326 Entrez gene
SwissProt Q9U215 EMBL-EBI
WormBase CE25498 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60526 Hypothetical protein Y56A3A.9 [Caenorhabditis elegans] ref|NP_499541.1| Y56A3A.9 [Caenorhabditis elegans] 0.0
blast CAB54468 Hypothetical protein Y64G10A.3 [Caenorhabditis elegans] ref|NP_502734.1| Y64G10A.3 [Caenorhabditis elegans] 1.0E-128
blast T27754 hypothetical protein ZK1320.8 - Caenorhabditis elegans 2.0E-67
Sequence
Target Sequence 
>C. ELEGANS:183679_AT
gataaaatctgcgggacatccatcaaacggtctaacaggccgcagaaagttggcacgcaa
cacgacaagaagtagcaagccgcccagggaacccccgctggatttccctgacaagacact
agacgactggaagaatcaccctggctccacaaaaagcctgcagaaactaaaccacacaaa
attcgttgctcacttcctggcgaaccgaccgacgaacaaaatactaggaactgctgcacc
aaaaatctgcaaatcggaggaagagctccctcgtgaaacccggactgagcttgccagatt
gcgctgtggccactcaagattatgtggttcttacgttgccagaattgaaaacagaagcat
ttccccttgcaggaaatgtggaagtgtggagggtgacgtgaatcaccttttgacctgcat
ctcctcggtccctctgctcccaaaggacctgtggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAAAATCTGCGGGACATCCATCA 374 423 597 Antisense
GGGACATCCATCAAACGGTCTAACA 696 493 609 Antisense
AACAGGCCGCAGAAAGTTGGCACGC 358 121 630 Antisense
GTTGGCACGCAACACGACAAGAAGT 659 435 645 Antisense
CCGCTGGATTTCCCTGACAAGACAC 567 261 691 Antisense
GATTTCCCTGACAAGACACTAGACG 70 429 697 Antisense
AGGAACTGCTGCACCAAAAATCTGC 330 53 822 Antisense
CGGACTGAGCTTGCCAGATTGCGCT 350 239 877 Antisense
GAGCTTGCCAGATTGCGCTGTGGCC 270 389 883 Antisense
ATGTGGTTCTTACGTTGCCAGAATT 337 47 918 Antisense
CTCTGCTCCCAAAGGACCTGTGGGA 538 231 1028 Antisense
Sequence Source Affymetrix Proprietary Database