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[183677_at]

Description C16E9.1 /REP_DB=WormBase Gene ID /WP=CE04015 /TR=Q18048 /GB=AAC47957.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 95      6grp_total > 58      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2828
1 2 3 4 range
A 641.7
(-2.2)
P 		344.3
(-2.8)
P 		253.1
(-3)
P 		3071.4
(3)
P 		2818
B 656.7
(-2.1)
P 		379.1
(-2.7)
P 		243.3
(-3)
P 		2952.9
(3)
P 		2710
C 722.9
(-2.1)
P 		360.3
(-2.8)
P 		290
(-3)
P 		3025.5
(3)
P 		2736
avr 673.8
(-2.1) 		361.2
(-2.8) 		262.1
(-3) 		3016.6
(3) 		2755

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 997
1 2 3 4 5 6 range
A 761.3
(-0.3)
P 		569.8
(-1.6)
P 		353.2
(-3)
P 		350.7
(-3)
P 		419.3
(-2.5)
P 		1260.2
(3)
P 		910
B 844
(0.2)
P 		525.9
(-2)
P 		402.5
(-2.8)
P 		407.7
(-2.8)
P 		376.9
(-3)
P 		1260.3
(3)
P 		883
C 890.2
(0.8)
P 		592.3
(-1)
P 		264.8
(-3)
P 		356.5
(-2.4)
P 		427.9
(-2)
P 		1262.1
(3)
P 		997
avr 831.8
(0.2) 		562.7
(-1.6) 		340.2
(-3) 		371.6
(-2.8) 		408
(-2.6) 		1260.9
(3) 		921
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 573
1 2 3 4 range
A 233.6
(-0.4)
P 		74.7
(-2.9)
P 		66.2
(-3)
P 		449.6
(3)
P 		383
B 209.4
(-1.4)
P 		93.6
(-2.6)
P 		56.4
(-3)
P 		629.3
(3)
P 		573
C 239.3
(-1)
P 		103.6
(-3)
P 		101.1
(-3)
P 		510.1
(3)
P 		409
avr 227.4
(-1) 		90.6
(-2.8) 		74.6
(-3) 		529.7
(3) 		455

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 140.3
(-1.3)
P 		202.7
(0.3)
P 		76.9
(-3)
P 		88.9
(-2.7)
P 		126.5
(-1.7)
P 		306.8
(3)
P 		230
B 293.7
(0.2)
P 		175.1
(-1.8)
P 		97.7
(-3)
P 		108
(-2.8)
P 		153.1
(-2.1)
P 		470
(3)
P 		372
C 329.9
(1.4)
P 		180.7
(-1.1)
P 		67.4
(-3)
P 		71.7
(-2.9)
P 		138.5
(-1.8)
P 		422.5
(3)
P 		355
avr 254.6
(0.3) 		186.2
(-1) 		80.7
(-3) 		89.5
(-2.8) 		139.4
(-1.9) 		399.8
(3) 		319
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183677_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16402
Sequence Type Exemplar sequence
Representative Public ID C16E9.1 NCBI
Target Description C16E9.1 /REP_DB=WormBase Gene ID /WP=CE04015 /TR=Q18048 /GB=AAC47957.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076775(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076775 NCBI Caenorhabditis elegans C16E9.1 (C16E9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000015455 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6940429:6943525:1 11/11 None
SNAP00000015451 ENSEMBL cdna:SNAP chromosome:CEL140:X:6940604:6943525:1 11/11 None
C16E9.1 ENSEMBL cdna:known chromosome:CEL140:X:6940429:6943563:1 gene:C16E9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6940428-6943525(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16E9.1
Entrez Gene 182693 Entrez gene
SwissProt Q18048 EMBL-EBI
WormBase CE35403 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47957 Hypothetical protein C16E9.1 [Caenorhabditis elegans] ref|NP_509176.2| C16E9.1 [Caenorhabditis elegans] 0.0
blast CAE65823 Hypothetical protein CBG10938 [Caenorhabditis briggsae] 0.0
blast CAG10021 unnamed protein product [Tetraodon nigroviridis] 5.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.8E-37
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 1.5E-46
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.8E-37
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 1.5E-46
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.8E-37
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 1.5E-46
Sequence
Target Sequence 
>C. ELEGANS:183677_AT
tcctgaaaaacgaggccccgtcaaggactgcatttacgatattggaatcatttttgattc
atctggctctttggagaaaaacttccagaaacaactggcttttgcaaaacagttagttga
acaaatgccaatttccgacaacgcgacaagggtcggtattgtccagtttgctggaaaaac
aaaagttagagtattagcgaacttctcccagaataaaagccaactaaaaactatcatcga
ccgatctccattctactctggaacaacgtttacaaaccaggctttaaagaaaatggctgc
cttatatgaagaatcaaaaaggccgaatgcaaagctgaagcttatgttgttcactgatgg
atattctgcagaagacacatcagaaggcgaagaagcacttaaaagccaaggcgttgttgt
gtacacggttggaatcagtacagacaaatcagcaggtttgaatatgaaagaattacgtgg
tatggcaacttcatcggaacattattacgattcctcggactttgcagatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGAAAAACGAGGCCCCGTCAAG 518 543 1152 Antisense
TTTTGATTCATCTGGCTCTTTGGAG 563 677 1203 Antisense
AATGCCAATTTCCGACAACGCGACA 555 165 1275 Antisense
AAGGGTCGGTATTGTCCAGTTTGCT 315 159 1299 Antisense
AGTATTAGCGAACTTCTCCCAGAAT 259 63 1341 Antisense
AACTATCATCGACCGATCTCCATTC 685 139 1380 Antisense
GATCTCCATTCTACTCTGGAACAAC 158 419 1394 Antisense
GTTGTTCACTGATGGATATTCTGCA 6 439 1497 Antisense
GCCAAGGCGTTGTTGTGTACACGGT 233 275 1556 Antisense
GTGGTATGGCAACTTCATCGGAACA 634 489 1628 Antisense
ACGATTCCTCGGACTTTGCAGATCT 709 93 1658 Antisense
Sequence Source Affymetrix Proprietary Database