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[183676_s_at]

Description F08F8.5 /REP_DB=WormBase Gene ID /WP=CE02601 /TR=Q19208 /GB=AAA68387.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 25      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_total > 25      4grp_total > 03      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 927
1 2 3 4 range
A 228.7
(-2.5)
P 		168.9
(-2.9)
P 		157.2
(-3)
P 		1084.4
(3)
P 		927
B 267.7
(-2.2)
P 		168.6
(-3)
P 		174.7
(-3)
P 		954.6
(3)
P 		786
C 253.2
(-2.4)
P 		169
(-3)
P 		184.5
(-2.9)
P 		1038
(3)
P 		869
avr 249.9
(-2.4) 		168.8
(-3) 		172.1
(-3) 		1025.7
(3) 		857

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2909
1 2 3 4 5 6 range
A 2491.7
(3)
P 		2232.9
(2.3)
P 		902.1
(-1.1)
P 		304
(-2.6)
P 		193.9
(-2.9)
P 		150.7
(-3)
M 		2341
B 2390.7
(1.6)
P 		3054.1
(3)
P 		723.3
(-1.9)
P 		293.7
(-2.8)
P 		237.9
(-2.9)
P 		175.2
(-3)
P 		2879
C 2207.2
(1.2)
P 		3056.7
(3)
P 		475.8
(-2.3)
P 		239.9
(-2.8)
P 		179.9
(-2.9)
P 		147.6
(-3)
P 		2909
avr 2363.2
(2) 		2781.2
(3) 		700.4
(-1.8) 		279.2
(-2.7) 		203.9
(-2.9) 		157.8
(-3) 		2623
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 83.3
(-0.7)
P 		36.7
(-3)
P 		41.1
(-2.8)
P 		158.7
(3)
P 		122
B 85.4
(-1.3)
P 		41.6
(-3)
P 		40.5
(-3)
P 		203.4
(3)
P 		163
C 83.8
(-1.3)
P 		48.6
(-3)
P 		64.3
(-2.3)
P 		175
(3)
P 		126
avr 84.2
(-1.2) 		42.3
(-3) 		48.6
(-2.7) 		179
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 980
1 2 3 4 5 6 range
A 459.3
(0.3)
P 		794.1
(3)
P 		196.5
(-1.7)
P 		77.1
(-2.7)
P 		58.5
(-2.8)
P 		36.7
(-3)
M 		757
B 831.8
(1.8)
P 		1016.6
(3)
P 		175.6
(-2.3)
P 		77.8
(-2.9)
P 		96.7
(-2.8)
P 		65.3
(-3)
P 		951
C 818.1
(2.2)
P 		932.7
(3)
P 		121.1
(-2.5)
P 		48.2
(-3)
P 		58.2
(-2.9)
P 		49.4
(-3)
P 		885
avr 703.1
(1.5) 		914.5
(3) 		164.4
(-2.2) 		67.7
(-2.9) 		71.1
(-2.9) 		50.5
(-3) 		864
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183676_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6347
Sequence Type Exemplar sequence
Representative Public ID F08F8.5 NCBI
Target Description F08F8.5 /REP_DB=WormBase Gene ID /WP=CE02601 /TR=Q19208 /GB=AAA68387.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066226(11), NM_066227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066226 NCBI Caenorhabditis elegans F08F8.5 (F08F8.5) mRNA, complete cds. 11/11 None
NM_066227 NCBI Caenorhabditis elegans F08F8.1 (F08F8.1) mRNA, complete cds. 11/11 A 
SNAP00000010816 ENSEMBL cdna:SNAP chromosome:CEL140:III:7362539:7363384:-1 11/11 None
GENEFINDER00000010822 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7362539:7363384:-1 11/11 None
F08F8.5 ENSEMBL cdna:known chromosome:CEL140:III:7362539:7363384:-1 gene:F08F8.5 11/11 None
F08F8.1 ENSEMBL cdna:known chromosome:CEL140:III:7364527:7366327:1 gene:F08F8.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022554 3/11 Cross Hyb Matching Probes None
GENEFINDER00000022569 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7364302-7365148(+) 100.0 100.0
chrIII:7362536-7363382(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F08F8.5
F08F8.1
Entrez Gene 176048 Entrez gene
176049 Entrez gene
SwissProt Q19209 EMBL-EBI
Q19208 EMBL-EBI
WormBase CE02597 Wormbase
CE02601 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68388 Hypothetical protein F08F8.1 [Caenorhabditis elegans] ref|NP_498628.1| F08F8.1 [Caenorhabditis elegans] 1.0E-141
blast AAA68387 Hypothetical protein F08F8.5 [Caenorhabditis elegans] ref|NP_498627.1| F08F8.5 [Caenorhabditis elegans] 7.0E-86
blast AAA68388 Hypothetical protein F08F8.1 [Caenorhabditis elegans] ref|NP_498628.1| F08F8.1 [Caenorhabditis elegans] 1.0E-52
Sequence
Target Sequence 
>C. ELEGANS:183676_S_AT
gagattctgcttctatttttgtgattgctgattctgattcatcggattcttcatctgatt
cttctgattctggagatgaagatgtcattattgctgatgctcctgaagtagctccacatc
gtcgtcattgtggaagacgtgatagatccagaagtcgtggatttgatcgttcaagatctc
gaagcagaagtcgttcaaatttccatgatcatcacaagagacatcaaatgaagaagctca
tgtggaaaagattccaagaatcccatggacatccagaattcaaaagacgtcactgttttg
gtggaagacgtgcaagatcagcatcaccaattggaagaagaccatgtcgtgaaggagaag
aattcaaaagacatccattaggatcatttggaacaccttgtggaagagaagaatttgaag
gtccaactggaggattcggaagaccatttggaagacgaggaatggatcatcatggattca
atttccatagacatcatcatccatttggagcattccatggattcggtggtcatcatcatg
gatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTCTGCTTCTATTTTTGTGAT 577 397 245 Antisense
GTGATTGCTGATTCTGATTCATCGG 61 485 265 Antisense
GATGTCATTATTGCTGATGCTCCTG 435 409 325 Antisense
GATGCTCCTGAAGTAGCTCCACATC 251 413 340 Antisense
TAGCTCCACATCGTCGTCATTGTGG 392 651 353 Antisense
GTCGTTCAAATTTCCATGATCATCA 398 473 434 Antisense
GATTCCAAGAATCCCATGGACATCC 192 433 494 Antisense
GACGTGCAAGATCAGCATCACCAAT 425 375 551 Antisense
ATTTCCATAGACATCATCATCCATT 609 17 725 Antisense
GGAGCATTCCATGGATTCGGTGGTC 433 521 751 Antisense
GATTCGGTGGTCATCATCATGGATT 174 433 764 Antisense
Sequence Source Affymetrix Proprietary Database