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[183675_s_at]

Description F58G11.5 /REP_DB=WormBase Gene ID /WP=CE28038 /TR=Q9XVM1 /GB=CAB03149.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 83      6grp_total > 58      4grp_total > 62      6grp_highest_sub > Cu      6grp_cgc > 27      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 455
1 2 3 4 range
A 672.9
(3)
P 		403.8
(-0.6)
P 		510.5
(0.9)
P 		218.3
(-3)
P 		455
B 614.4
(3)
P 		460.7
(0.4)
P 		516.3
(1.3)
P 		257.8
(-3)
P 		357
C 637.3
(3)
P 		423.8
(-1.4)
P 		509.2
(0.4)
P 		347.2
(-3)
P 		290
avr 641.5
(3) 		429.4
(-0.5) 		512
(0.9) 		274.4
(-3) 		367

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 458.8
(-0.5)
P 		398.6
(-3)
P 		397.5
(-3)
P 		463.9
(-0.3)
P 		445.3
(-1.1)
P 		544.9
(3)
P 		147
B 554.4
(3)
P 		472.3
(0.3)
P 		369.9
(-3)
P 		422.4
(-1.3)
P 		384.6
(-2.5)
P 		546.2
(2.7)
P 		185
C 422.2
(-2.1)
P 		465.9
(-0.2)
P 		408
(-2.7)
P 		537.6
(2.8)
P 		401.1
(-3)
P 		542
(3)
P 		141
avr 478.5
(0.4) 		445.6
(-0.9) 		391.8
(-3) 		474.6
(0.3) 		410.3
(-2.3) 		544.4
(3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 245
(3)
P 		87.7
(-1.4)
P 		133.4
(-0.1)
P 		32
(-3)
P 		213
B 195.9
(3)
P 		113.8
(-0.5)
P 		119.6
(-0.2)
P 		54.9
(-3)
P 		141
C 211
(3)
P 		121.9
(-0.5)
P 		177.5
(1.7)
P 		58.5
(-3)
P 		153
avr 217.3
(3) 		107.8
(-0.9) 		143.5
(0.4) 		48.5
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 84.6
(-3)
P 		141.8
(3)
P 		86.6
(-2.8)
P 		117.7
(0.5)
P 		134.4
(2.2)
P 		132.7
(2)
P 		57
B 192.9
(2.4)
P 		157.2
(0.6)
P 		89.8
(-3)
P 		111.9
(-1.8)
P 		156.2
(0.5)
P 		203.7
(3)
P 		114
C 156.5
(1.1)
P 		142.2
(-0)
P 		103.9
(-3)
P 		108.1
(-2.7)
P 		129.8
(-1)
P 		181.4
(3)
P 		78
avr 144.7
(0.9) 		147.1
(1.1) 		93.4
(-3) 		112.6
(-1.5) 		140.1
(0.5) 		172.6
(3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183675_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13683
Sequence Type Exemplar sequence
Representative Public ID F58G11.5 NCBI
Target Description F58G11.5 /REP_DB=WormBase Gene ID /WP=CE28038 /TR=Q9XVM1 /GB=CAB03149.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073985(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073985 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-65) (tag-65) mRNA, complete cds. 11/11 None
SNAP00000001243 ENSEMBL cdna:SNAP chromosome:CEL140:V:13678706:13681173:-1 11/11 None
GENEFINDER00000001248 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13678706:13681173:-1 11/11 None
F58G11.5.1 ENSEMBL cdna:known chromosome:CEL140:V:13678622:13681178:-1 gene:F58G11.5 11/11 None
F58G11.5.2 ENSEMBL cdna:known chromosome:CEL140:V:13678651:13681189:-1 gene:F58G11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13678705-13681549(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-65
Ensembl F58G11.5
Entrez Gene 179857 Entrez gene
SwissProt Q9XVM1 EMBL-EBI
WormBase CE28038 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03149 Hypothetical protein F58G11.5 [Caenorhabditis elegans] ref|NP_506386.1| Temporarily Assigned Gene name family member (tag-65) [Caenorhabditis elegans] gb|AAN77185.1| SR-related CTD associated factor 6 [Caenorhabditis elegans] 0.0
blast CAE66264 Hypothetical protein CBG11508 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 4.2E-16
Sequence
Target Sequence 
>C. ELEGANS:183675_S_AT
atactatgcttcacaggagccacccgaaaatttaagagaagattccgaggcgaggcgttc
caattcacgatcccctcctagagaccacaagagatcgaggtcgccgtcacgaagtccaag
cccgagaagacgacaacgatcttcatcgaattcatctaggtcttcgggttcttcgtcaag
atcctcttcttctagcagaaaatcgtctccggaaagaggaagagacagtaacattggaca
gcgaggatacggcggaggaggtttcagtgaaagaccttcgtttggattcaaatctgccca
ggaaccactctcgtacgataacaaaggtgcccaacttatggctaaaatgggttggggagg
aaaaggattgggagcaaatgaaagtggaatcgttgatcctgtgtctggtggagaagttcg
taatagaaatgagcaatttatgggccttggtcgttcacttgatccatatgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTATGCTTCACAGGAGCCACCC 677 23 1635 Antisense
GAGAAGATTCCGAGGCGAGGCGTTC 324 391 1670 Antisense
ATCCCCTCCTAGAGACCACAAGAGA 555 35 1704 Antisense
ACAAGAGATCGAGGTCGCCGTCACG 372 111 1721 Antisense
AATTCATCTAGGTCTTCGGGTTCTT 516 175 1783 Antisense
TCTTCGGGTTCTTCGTCAAGATCCT 519 617 1795 Antisense
GGATTCAAATCTGCCCAGGAACCAC 27 509 1918 Antisense
CAGGAACCACTCTCGTACGATAACA 545 195 1933 Antisense
GAATCGTTGATCCTGTGTCTGGTGG 643 329 2021 Antisense
ATTTATGGGCCTTGGTCGTTCACTT 377 11 2070 Antisense
GGTCGTTCACTTGATCCATATGAGC 523 501 2083 Antisense
Sequence Source Affymetrix Proprietary Database