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[183673_at]

Description F36H5.4 /REP_DB=WormBase Gene ID /WP=CE09961 /TR=P91297 /GB=AAK31515.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 28      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 27.2
(0.3)
A 		5.8
(-3)
A 		6.4
(-2.9)
A 		45.3
(3)
A 		40
B 34.1
(0.7)
A 		53.4
(3)
P 		3.5
(-3)
A 		46.6
(2.2)
A 		50
C 33.1
(-0)
A 		52.5
(3)
A 		14.3
(-3)
A 		19.9
(-2.1)
A 		38
avr 31.5
(1.8) 		37.2
(3) 		8.1
(-3) 		37.3
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 10.4
(-2.4)
A 		4.6
(-3)
A 		38
(0.6)
A 		9.6
(-2.5)
A 		28.8
(-0.4)
A 		60.8
(3)
A 		56
B 27.5
(-0.6)
A 		5.4
(-2.7)
A 		4.2
(-2.8)
A 		2.6
(-3)
A 		33
(-0)
A 		63.9
(3)
P 		61
C 39.9
(-0.3)
A 		26.8
(-1.4)
A 		11.5
(-2.7)
A 		57.9
(1.3)
A 		8.1
(-3)
A 		77.6
(3)
P 		70
avr 25.9
(-1.5) 		12.3
(-3) 		17.9
(-2.4) 		23.4
(-1.8) 		23.3
(-1.8) 		67.4
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.9
(3)
A 		1.3
(-3)
A 		1.7
(-2.7)
A 		6.6
(0.7)
A 		9
B 10.9
(1.9)
A 		13.2
(3)
P 		0.8
(-3)
A 		9.9
(1.4)
A 		12
C 11
(0.9)
A 		15.1
(3)
A 		5
(-2.2)
A 		3.4
(-3)
A 		12
avr 10.6
(3) 		9.9
(2.5) 		2.5
(-3) 		6.6
(0) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.9
(-2.9)
A 		1.6
(-3)
A 		8.3
(0)
A 		2.4
(-2.6)
A 		8.7
(0.2)
A 		14.8
(3)
A 		13
B 9.6
(-0.7)
A 		1.8
(-2.7)
A 		1
(-2.9)
A 		0.7
(-3)
A 		13.4
(0.3)
A 		23.8
(3)
P 		23
C 14.8
(0.1)
A 		8.2
(-1.6)
A 		2.9
(-2.9)
A 		11.6
(-0.7)
A 		2.6
(-3)
A 		26
(3)
P 		23
avr 8.8
(-1.3) 		3.9
(-3) 		4.1
(-2.9) 		4.9
(-2.7) 		8.2
(-1.5) 		21.5
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183673_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5667
Sequence Type Exemplar sequence
Representative Public ID F36H5.4 NCBI
Target Description F36H5.4 /REP_DB=WormBase Gene ID /WP=CE09961 /TR=P91297 /GB=AAK31515.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061671(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061671 NCBI Caenorhabditis elegans F36H5.4 (F36H5.4) mRNA, complete cds. 11/11 None
SNAP00000028523 ENSEMBL cdna:SNAP chromosome:CEL140:II:1761956:1762840:1 11/11 None
GENEFINDER00000028530 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1759905:1762840:1 11/11 None
F36H5.4 ENSEMBL cdna:known chromosome:CEL140:II:1761842:1762909:1 gene:F36H5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1761885-1762839(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H5.4
Entrez Gene 173544 Entrez gene
SwissProt P91297 EMBL-EBI
WormBase CE09961 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31515 Hypothetical protein F36H5.4 [Caenorhabditis elegans] ref|NP_494072.1| F36H5.4 [Caenorhabditis elegans] 1.0E-171
blast AAK31515 Hypothetical protein F36H5.4 [Caenorhabditis elegans] ref|NP_494072.1| F36H5.4 [Caenorhabditis elegans] 1.0E-157
blast AAK31515 Hypothetical protein F36H5.4 [Caenorhabditis elegans] ref|NP_494072.1| F36H5.4 [Caenorhabditis elegans] 1.0E-155
blast AAK31516 Hypothetical protein F36H5.5 [Caenorhabditis elegans] ref|NP_494071.1| F36H5.5 [Caenorhabditis elegans] 1.0E-112
blast AAM98051 Hypothetical protein C08F1.10 [Caenorhabditis elegans] ref|NP_872027.1| C08F1.10 [Caenorhabditis elegans] 4.0E-68
blast AAM98051 Hypothetical protein C08F1.10 [Caenorhabditis elegans] ref|NP_872027.1| C08F1.10 [Caenorhabditis elegans] 1.0E-66
blast AAM98051 Hypothetical protein C08F1.10 [Caenorhabditis elegans] ref|NP_872027.1| C08F1.10 [Caenorhabditis elegans] 2.0E-66
blast AAY55851 Hypothetical protein C08F1.11 [Caenorhabditis elegans] ref|NP_001021937.1| C08F1.11 [Caenorhabditis elegans] 2.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494072.1 6 27-49,85-107,123-145,150-172,194-213,228-250
F36H5.4 6 27-49,85-107,123-145,150-172,194-213,228-250
SNAP00000028523 6 5-27,62-84,100-122,127-149,171-190,205-227
GENEFINDER00000028530 11 27-49,70-89,104-126,133-150,170-192,204-226,262-284,300-322,327-349,371-390,405-427
Sequence
Target Sequence 
>C. ELEGANS:183673_AT
gctccaagcggtatctcatggctgctacattggtcttcttgaacatcttgttcctagtca
acagtattgtcggtctgtacagcagaattgcaattgacatctcccttgtcatcctcttga
tcatctgtttttttggctacaaagcgtttaatctggcctatgaatcagcagccccaattc
actacagatctttggaaactaccaaagtgactaaagctcagaaagtattcatcttcctgt
tcctcaccctctccgggctcttttgcataagtcttagctttattgacctgaatcctttgg
ccgatgagtatgtggcttcgggattcttctatacaactcgattcatctgccccatcatca
atattctcgcaatcccaatgttctacgaggctttcttggcctataactccgaggagcttg
cattcagtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCAAGCGGTATCTCATGGCTGC 115 299 368 Antisense
GCTGCTACATTGGTCTTCTTGAACA 477 297 388 Antisense
TGCAATTGACATCTCCCTTGTCATC 265 577 456 Antisense
TCATCCTCTTGATCATCTGTTTTTT 696 621 476 Antisense
CTGGCCTATGAATCAGCAGCCCCAA 542 241 520 Antisense
AGAAAGTATTCATCTTCCTGTTCCT 380 71 587 Antisense
TCCGGGCTCTTTTGCATAAGTCTTA 179 593 619 Antisense
TATTGACCTGAATCCTTTGGCCGAT 15 665 648 Antisense
ATCATCAATATTCTCGCAATCCCAA 234 31 721 Antisense
GCAATCCCAATGTTCTACGAGGCTT 521 321 736 Antisense
ACTCCGAGGAGCTTGCATTCAGTGG 387 97 773 Antisense
Sequence Source Affymetrix Proprietary Database