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[183672_at]

Description F59H5.3 /REP_DB=WormBase Gene ID /WP=CE19911 /TR=Q9TZI3 /GB=AAC67450.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 28      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 51.4
(0.5)
A 		73
(3)
A 		20.2
(-3)
A 		54.1
(0.9)
P 		53
B 51.7
(1.1)
A 		35.2
(-1.1)
A 		20.9
(-3)
A 		65.6
(3)
A 		45
C 42.5
(-2)
A 		56.7
(-1)
P 		29.2
(-3)
A 		112.9
(3)
P 		84
avr 48.5
(-0.2) 		55
(0.5) 		23.4
(-3) 		77.5
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 48.2
(0.5)
A 		33.7
(-3)
A 		52.6
(1.5)
A 		37.6
(-2.1)
A 		36.2
(-2.4)
P 		58.7
(3)
P 		25
B 43.2
(1.3)
P 		30.8
(-1.4)
A 		23.6
(-3)
A 		43.3
(1.4)
M 		43.9
(1.5)
P 		50.7
(3)
P 		27
C 62.2
(1.3)
A 		24.2
(-3)
A 		50.4
(-0.1)
A 		37.3
(-1.5)
A 		32.1
(-2.1)
P 		77.7
(3)
P 		54
avr 51.2
(1) 		29.6
(-3) 		42.2
(-0.7) 		39.4
(-1.2) 		37.4
(-1.6) 		62.4
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 18.7
(3)
A 		15.9
(1.7)
A 		5.3
(-3)
A 		7.9
(-1.8)
P 		13
B 16.5
(3)
A 		8.7
(-1)
A 		4.9
(-3)
A 		14
(1.7)
A 		12
C 14.1
(-0.3)
A 		16.3
(1.2)
P 		10.2
(-3)
A 		19
(3)
P 		9
avr 16.4
(3) 		13.6
(1.3) 		6.8
(-3) 		13.6
(1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.9
(-3)
A 		12
(0.4)
A 		11.5
(-0.1)
A 		9.5
(-2.3)
A 		10.9
(-0.8)
P 		14.3
(3)
P 		5
B 15
(1.2)
P 		10.3
(-0.9)
A 		5.7
(-3)
A 		11.5
(-0.4)
M 		17.8
(2.5)
P 		18.9
(3)
P 		13
C 23.1
(2.1)
A 		7.4
(-3)
A 		12.8
(-1.3)
A 		7.5
(-3)
A 		10.4
(-2)
P 		26
(3)
P 		19
avr 15.7
(0.6) 		9.9
(-2.8) 		10
(-2.7) 		9.5
(-3) 		13
(-0.9) 		19.7
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183672_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5140
Sequence Type Exemplar sequence
Representative Public ID F59H5.3 NCBI
Target Description F59H5.3 /REP_DB=WormBase Gene ID /WP=CE19911 /TR=Q9TZI3 /GB=AAC67450.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061885 NCBI Caenorhabditis elegans F59H5.3 (F59H5.3) mRNA, complete cds. 11/11 None
GENEFINDER00000038773 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2514978:2516098:-1 11/11 None
F59H5.3 ENSEMBL cdna:known chromosome:CEL140:II:2514983:2516098:-1 gene:F59H5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038766 4/11 Cross Hyb Matching Probes None
SNAP00000038767 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2514976-2516097(-) 100.0 100.0
Public Domain and Genome References
Ensembl F59H5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494286 F59H5.3 [Caenorhabditis elegans] 1.0E-113
blast AAC26268 Hypothetical protein F40B1.1 [Caenorhabditis elegans] ref|NP_494287.1| F40B1.1 [Caenorhabditis elegans] 1.0E-101
blast NP_494286 F59H5.3 [Caenorhabditis elegans] 8.0E-93
blast H88066 protein R52.10 [imported] - Caenorhabditis elegans 3.0E-81
blast AAC26268 Hypothetical protein F40B1.1 [Caenorhabditis elegans] ref|NP_494287.1| F40B1.1 [Caenorhabditis elegans] 8.0E-73
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 2.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 7.5E-30
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.9E-19
Pfam IPR000210 EMBL-EBI BTB/POZ domain 0.0011
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.0E-10
Sequence
Target Sequence 
>C. ELEGANS:183672_AT
ggatcattgatactgaattcgaattcaaactgaaaacttcgagagggaaagtgtatgggg
gagatgagaaatttgagtttgaatttacaaatgagcccaaaactggccgtggacagtgga
attttattcgttgggacaaattgataaacgactacctaatcgatgatgttgtcactgttg
aagccgctgtgaagatcatcaagacgactggaatctcgaagaaagcgctcaaaagctttg
aaaaatcgaatgaagcattttccgatgtggttctcgcggtcggagacaaaaagtttttcg
tgctcagaaagaatcttctagaggttctgtatggtgaacccgctattgacgataatacta
tcgatggaatgctcctcctcgcccacatgtacgatatggctcttccaatccgaaaatgcg
aagagtttctgatcgaagaatctgaaaagtcgatgaaggatcaactcaaaatcgcaaaac
aataccaattggagaatttgaagaaatcttgtctcctgaaaatcaacacagtcgatgaga
tcaaagcggctttggctggaaatttggccgatatggatccatcagtggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCATTGATACTGAATTCGAATT 475 509 206 Antisense
TGAGCCCAAAACTGGCCGTGGACAG 447 563 297 Antisense
GATAAACGACTACCTAATCGATGAT 345 423 348 Antisense
ACCTAATCGATGATGTTGTCACTGT 465 87 359 Antisense
GACAAAAAGTTTTTCGTGCTCAGAA 700 363 490 Antisense
GTATGGTGAACCCGCTATTGACGAT 307 455 534 Antisense
TACTATCGATGGAATGCTCCTCCTC 53 645 561 Antisense
GTACGATATGGCTCTTCCAATCCGA 246 459 594 Antisense
GGCTCTTCCAATCCGAAAATGCGAA 491 539 603 Antisense
AGCGGCTTTGGCTGGAAATTTGGCC 424 77 750 Antisense
GGCCGATATGGATCCATCAGTGGTT 700 541 771 Antisense
Sequence Source Affymetrix Proprietary Database