[Home] | [Total List]

[183671_at]

Description F58F9.4 /REP_DB=WormBase Gene ID /WP=CE07301 /TR=Q20988 /GB=AAC48085.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 80      6grp_total > 41      4grp_total > 46      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 204.2
(1.8)
P 		188.5
(0.2)
P 		216.6
(3)
P 		156.2
(-3)
P 		60
B 277.7
(3)
P 		177.7
(-0.9)
P 		181.3
(-0.8)
P 		124.8
(-3)
P 		153
C 209
(0.4)
P 		205.5
(0.2)
P 		154.3
(-3)
P 		250.7
(3)
P 		96
avr 230.3
(3) 		190.6
(-1.5) 		184.1
(-2.2) 		177.2
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 170.6
(-1.2)
P 		178
(-0.8)
P 		267
(3)
P 		183.1
(-0.6)
P 		187.9
(-0.4)
P 		128
(-3)
P 		139
B 233.1
(2.3)
P 		209.8
(1.4)
P 		245.3
(2.7)
P 		253.8
(3)
P 		163
(-0.2)
P 		85.2
(-3)
P 		169
C 198.1
(-0.2)
P 		244.8
(0.9)
P 		235.1
(0.7)
P 		326.9
(3)
P 		157.1
(-1.3)
P 		88.1
(-3)
P 		239
avr 200.6
(0.9) 		210.9
(1.3) 		249.1
(2.8) 		254.6
(3) 		169.3
(-0.3) 		100.4
(-3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 74.3
(3)
P 		40.9
(-0.9)
P 		56.6
(0.9)
P 		22.9
(-3)
P 		51
B 88.5
(3)
P 		43.9
(-1.3)
P 		42
(-1.5)
P 		26.6
(-3)
P 		62
C 69.2
(3)
P 		59.1
(0.7)
P 		53.8
(-0.4)
P 		42.3
(-3)
P 		27
avr 77.3
(3) 		48
(-0.8) 		50.8
(-0.4) 		30.6
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 31.5
(-2.9)
P 		63.3
(3)
P 		58.1
(2)
P 		46.4
(-0.2)
P 		56.7
(1.8)
P 		31.2
(-3)
P 		32
B 81.1
(3)
P 		69.8
(1.6)
P 		59.6
(0.4)
P 		67.2
(1.3)
P 		66.2
(1.2)
P 		31.8
(-3)
P 		49
C 73.4
(2.8)
P 		74.7
(3)
P 		59.8
(1)
P 		65.7
(1.8)
P 		50.8
(-0.2)
P 		29.5
(-3)
P 		45
avr 62
(1.9) 		69.3
(3) 		59.2
(1.4) 		59.8
(1.5) 		57.9
(1.2) 		30.8
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183671_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11076
Sequence Type Exemplar sequence
Representative Public ID F58F9.4 NCBI
Target Description F58F9.4 /REP_DB=WormBase Gene ID /WP=CE07301 /TR=Q20988 /GB=AAC48085.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068538(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068538 NCBI Caenorhabditis elegans F58F9.4 (F58F9.4) mRNA, complete cds. 11/11 None
GENEFINDER00000041839 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6231028:6235545:1 11/11 None
F58F9.4 ENSEMBL cdna:known chromosome:CEL140:IV:6231028:6232404:1 gene:F58F9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041823 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6231033-6232410(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58F9.4
Entrez Gene 186536 Entrez gene
SwissProt Q20988 EMBL-EBI
WormBase CE07301 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48085 Hypothetical protein F58F9.4 [Caenorhabditis elegans] ref|NP_500939.1| F58F9.4 [Caenorhabditis elegans] 1.0E-176
blast AAC48085 Hypothetical protein F58F9.4 [Caenorhabditis elegans] ref|NP_500939.1| F58F9.4 [Caenorhabditis elegans] 1.0E-167
blast AAC48083 Hypothetical protein F58F9.3b [Caenorhabditis elegans] ref|NP_001023242.1| F58F9.3b [Caenorhabditis elegans] 1.0E-162
blast AAC48084 Hypothetical protein F58F9.3a [Caenorhabditis elegans] ref|NP_001023241.1| F58F9.3a [Caenorhabditis elegans] 3.0E-79
blast AAC48083 Hypothetical protein F58F9.3b [Caenorhabditis elegans] ref|NP_001023242.1| F58F9.3b [Caenorhabditis elegans] 1.0E-58
blast AAK29789 Hypothetical protein C49A9.2 [Caenorhabditis elegans] ref|NP_500937.1| C49A9.2 [Caenorhabditis elegans] 4.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 7.4E-66
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 1.5E-69
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 6.8E-84
Sequence
Target Sequence 
>C. ELEGANS:183671_AT
gctattgaccaaactcttgctattggaaaatatatgattactgttagagcaacaaatcat
aaagaagaaagcaaattcaaaaacttgcagtattgcgccaccgttctaaagaaaattgag
ccggctcctcctatgtgtagctccagcacatcctcgactactgttgggaagggatttcag
tcccgacaacaaccggaaaacaaaatcaaaacgatgaacgcattcatctatagagtaatt
aagaaaaatcaccgcacgatttactttttatggatttgtgaacgttacgaacaagcaata
tttttttcgaaaacatacaacctgactaaaaatgcgaaatcgaattggcaatgcttcaaa
tacgttaggcagattgaagatatgtttcccgtcgatgtagtcggaaatttgttagaaata
aaaacaacaattagtcattatcaaccaatgactaatatgacacagtatccacaagtcttc
gcagtgcatttcggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATTGACCAAACTCTTGCTATTG 696 303 340 Antisense
AAAACTTGCAGTATTGCGCCACCGT 22 131 419 Antisense
GTATTGCGCCACCGTTCTAAAGAAA 305 453 429 Antisense
AAGAAAATTGAGCCGGCTCCTCCTA 349 153 448 Antisense
CTATGTGTAGCTCCAGCACATCCTC 477 223 470 Antisense
GCACATCCTCGACTACTGTTGGGAA 593 315 485 Antisense
GGATTTCAGTCCCGACAACAACCGG 35 509 511 Antisense
TCACCGCACGATTTACTTTTTATGG 683 625 588 Antisense
GATATGTTTCCCGTCGATGTAGTCG 535 425 718 Antisense
GACACAGTATCCACAAGTCTTCGCA 692 365 798 Antisense
AAGTCTTCGCAGTGCATTTCGGATT 99 157 812 Antisense
Sequence Source Affymetrix Proprietary Database