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[183670_at]

Description C18A3.1 /REP_DB=WormBase Gene ID /WP=CE01793 /TR=Q09956 /GB=AAA68372.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_high_8_8 > 04      6grp_highest_nonorm > 91      6grp_total > 86      4grp_total > 12      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 144
(-1.6)
P 		143.8
(-1.6)
A 		125.5
(-3)
A 		205.3
(3)
P 		80
B 133.5
(-1.2)
P 		127.4
(-1.5)
A 		97
(-3)
P 		219.6
(3)
P 		123
C 167.2
(0.5)
P 		120.7
(-3)
P 		138.5
(-1.7)
P 		200.9
(3)
P 		80
avr 148.2
(-1.1) 		130.6
(-2.3) 		120.3
(-3) 		208.6
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 170.9
(-0.3)
P 		82.6
(-3)
P 		152.3
(-0.9)
P 		202.4
(0.6)
P 		242.9
(1.8)
P 		282.1
(3)
P 		200
B 123.4
(-2.8)
P 		118.7
(-3)
P 		159.5
(-1.6)
P 		161.5
(-1.6)
P 		282.8
(2.5)
P 		298.9
(3)
P 		180
C 95.9
(-3)
P 		126.5
(-2.2)
P 		159.3
(-1.4)
P 		252.2
(0.9)
P 		190.5
(-0.6)
P 		337.4
(3)
P 		242
avr 130.1
(-2.4) 		109.3
(-3) 		157
(-1.5) 		205.4
(-0.1) 		238.7
(0.9) 		306.1
(3) 		197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 52.4
(3)
P 		31.2
(-2.7)
A 		32.8
(-2.3)
A 		30.1
(-3)
P 		22
B 42.6
(2)
P 		31.5
(-0.8)
A 		22.5
(-3)
P 		46.8
(3)
P 		24
C 55.4
(3)
P 		34.7
(-2.8)
P 		48.3
(1)
P 		33.9
(-3)
P 		22
avr 50.1
(3) 		32.5
(-3) 		34.5
(-2.3) 		36.9
(-1.5) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 31.5
(-2.7)
P 		29.4
(-3)
P 		33.2
(-2.5)
P 		51.3
(-0)
P 		73.3
(3)
P 		68.7
(2.4)
P 		44
B 42.9
(-2.7)
P 		39.5
(-2.9)
P 		38.7
(-3)
P 		42.8
(-2.7)
P 		114.9
(3)
P 		111.5
(2.7)
P 		76
C 35.5
(-3)
P 		38.6
(-2.8)
P 		40.5
(-2.6)
P 		50.7
(-1.8)
P 		61.6
(-1)
P 		113
(3)
P 		78
avr 36.6
(-2.9) 		35.8
(-3) 		37.5
(-2.8) 		48.3
(-1.8) 		83.3
(1.6) 		97.7
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4501
Sequence Type Exemplar sequence
Representative Public ID C18A3.1 NCBI
Target Description C18A3.1 /REP_DB=WormBase Gene ID /WP=CE01793 /TR=Q09956 /GB=AAA68372.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062726(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062726 NCBI Caenorhabditis elegans C18A3.1 (C18A3.1) mRNA, complete cds. 11/11 None
SNAP00000023265 ENSEMBL cdna:SNAP chromosome:CEL140:II:5718129:5721741:1 9/11 None
GENEFINDER00000023271 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5720129:5721741:1 11/11 None
C18A3.1 ENSEMBL cdna:known chromosome:CEL140:II:5720129:5721741:1 gene:C18A3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5720125-5721738(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18A3.1
Entrez Gene 173970 Entrez gene
SwissProt Q09956 EMBL-EBI
WormBase CE01793 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism inferred from electronic annotation QuickGO AmiGO
6306 DNA methylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
8168 methyltransferase activity inferred from electronic annotation QuickGO AmiGO
8170 N-methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68372 Hypothetical protein C18A3.1 [Caenorhabditis elegans] ref|NP_495127.1| C18A3.1 [Caenorhabditis elegans] 0.0
blast AAA68371 Hypothetical protein C18A3.2 [Caenorhabditis elegans] ref|NP_495126.1| C18A3.2 [Caenorhabditis elegans] 1.0E-163
blast CAE59178 Hypothetical protein CBG02486 [Caenorhabditis briggsae] 1.0E-153
blast CAE59179 Hypothetical protein CBG02487 [Caenorhabditis briggsae] 1.0E-135
blast XP_237515 PREDICTED: similar to methyltransferase like 4 [Rattus norvegicus] 7.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR007757 EMBL-EBI MT-A70 1.7E-80
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.8E-93
Pfam IPR007757 EMBL-EBI MT-A70 5.2E-67
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000023265 5 5-22,26-48,170-192,197-219,231-253
Sequence
Target Sequence 
>C. ELEGANS:183670_AT
caagagcacatgatctcctcttcgacttgatcattgccgatccaccatggttcagtaaat
cagtgaaacgaaaacgaacatatcaaatggacgaagaagttctagattgtctcgatattc
ctgtcatattaactcatgatgctctgattgctttctggatcacaaatcggataggaattg
aggaagaaatgatagaaagattcgataaatggggaatggaagttgttgccacttggaaat
tgctgaaaatcacaacacaaggagatccagtttatgattttgataaccaaaaacataaag
ttccatttgaatcactgatgttggcgaagaaaaaggattcgatgagaaagtttgagttgc
cggagaattttgtttttgccagcgttccaatgtcagtacactctcacaaacctccattgc
tcgatcttctccgtcattttggaatcgaattcacagaacctctggaactcttcgcccgat
ctcttcttccatcaacccacagtgttggttacgaaccattccttctacaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGAGCACATGATCTCCTCTTCGA 306 185 545 Antisense
TCCTCTTCGACTTGATCATTGCCGA 620 591 560 Antisense
TTGCCGATCCACCATGGTTCAGTAA 62 689 578 Antisense
TAGATTGTCTCGATATTCCTGTCAT 307 653 647 Antisense
AACTCATGATGCTCTGATTGCTTTC 436 139 675 Antisense
GAATTTTGTTTTTGCCAGCGTTCCA 169 325 909 Antisense
AGCGTTCCAATGTCAGTACACTCTC 613 81 925 Antisense
CGATCTTCTCCGTCATTTTGGAATC 261 249 966 Antisense
TCACAGAACCTCTGGAACTCTTCGC 168 627 995 Antisense
TTCTTCCATCAACCCACAGTGTTGG 704 689 1028 Antisense
GTTACGAACCATTCCTTCTACAATC 430 445 1052 Antisense
Sequence Source Affymetrix Proprietary Database