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[183668_s_at]

Description Y51A2A.9 /REP_DB=WormBase Gene ID /WP=CE20279 /TR=Q9U271 /GB=CAB63376.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 5.9
(-1.8)
A 		3.5
(-2.4)
A 		1.2
(-3)
A 		24.1
(3)
A 		23
B 2.9
(-2.9)
A 		2.3
(-3)
A 		2
(-3)
A 		53.6
(3)
A 		52
C 1.5
(-2.9)
A 		2.2
(-2.8)
A 		0.5
(-3)
A 		58.6
(3)
A 		58
avr 3.4
(-2.7) 		2.7
(-2.8) 		1.2
(-3) 		45.4
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.5
(-3)
A 		1.6
(-3)
A 		1.8
(-2.9)
A 		2.1
(-2.8)
A 		12.4
(-0)
A 		23.6
(3)
A 		22
B 0.9
(-3)
A 		18.1
(3)
A 		1.6
(-2.8)
A 		1.7
(-2.7)
A 		3.9
(-2)
A 		16.5
(2.4)
A 		17
C 14.2
(3)
A 		3.6
(-2.1)
A 		1.7
(-3)
A 		6.3
(-0.8)
A 		3.1
(-2.3)
A 		12.1
(2)
A 		13
avr 5.5
(-1.5) 		7.8
(-0.7) 		1.7
(-3) 		3.4
(-2.4) 		6.5
(-1.2) 		17.4
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.2
(0.6)
A 		0.8
(-2.1)
A 		0.3
(-3)
A 		3.5
(3)
A 		3
B 0.9
(-2.8)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		11.4
(3)
A 		11
C 0.5
(-2.8)
A 		0.6
(-2.8)
A 		0.2
(-3)
A 		9.9
(3)
A 		10
avr 1.2
(-2.3) 		0.7
(-2.7) 		0.3
(-3) 		8.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.6
(-2.7)
A 		0.4
(-2.9)
A 		0.5
(-2.8)
A 		3.8
(0.9)
A 		5.7
(3)
A 		5
B 0.3
(-3)
A 		6
(2.9)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		1.6
(-1.7)
A 		6.1
(3)
A 		6
C 5.2
(3)
A 		1.1
(-2.1)
A 		0.4
(-3)
A 		1.3
(-1.9)
A 		1
(-2.3)
A 		4
(1.5)
A 		5
avr 1.9
(-1.2) 		2.6
(-0.3) 		0.4
(-3) 		0.7
(-2.6) 		2.1
(-0.9) 		5.3
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183668_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14104
Sequence Type Exemplar sequence
Representative Public ID Y51A2A.9 NCBI
Target Description Y51A2A.9 /REP_DB=WormBase Gene ID /WP=CE20279 /TR=Q9U271 /GB=CAB63376.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075431(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075431 NCBI Caenorhabditis elegans M162.8 (M162.8) mRNA, complete cds. 11/11 A 
SNAP00000032747 ENSEMBL cdna:SNAP chromosome:CEL140:V:19771399:19778275:-1 10/11 None
GENEFINDER00000032754 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19774078:19776682:-1 11/11 None
SNAP00000039475 ENSEMBL cdna:SNAP chromosome:CEL140:V:18311924:18314559:1 9/11 None
GENEFINDER00000039483 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18313498:18314559:1 11/11 None
Y51A2A.9 ENSEMBL cdna:pseudogene chromosome:CEL140:V:18313498:18314559:1 gene:Y51A2A.9 11/11 None
M162.8 ENSEMBL cdna:known chromosome:CEL140:V:19774078:19776706:-1 gene:M162.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18313497-18314559(+) 100.0 100.0
chrV:19774097-19775172(-) 90.76 93.31
Public Domain and Genome References
Gene Title
Ensembl Y51A2A.9
M162.8
Entrez Gene 187491 Entrez gene
SwissProt Q9XUD2 EMBL-EBI
WormBase CE18898 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05251 Hypothetical protein M162.8 [Caenorhabditis elegans] ref|NP_507832.1| M162.8 [Caenorhabditis elegans] 0.0
blast CAB05251 Hypothetical protein M162.8 [Caenorhabditis elegans] ref|NP_507832.1| M162.8 [Caenorhabditis elegans] 2.0E-81
blast CAB05251 Hypothetical protein M162.8 [Caenorhabditis elegans] ref|NP_507832.1| M162.8 [Caenorhabditis elegans] 1.0E-65
blast NP_500676 Y9C9A.8 [Caenorhabditis elegans] gb|AAF60932.1| Hypothetical protein Y9C9A.8 [Caenorhabditis elegans] 4.0E-48
blast NP_500676 Y9C9A.8 [Caenorhabditis elegans] gb|AAF60932.1| Hypothetical protein Y9C9A.8 [Caenorhabditis elegans] 1.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-19
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.7E-33
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-19
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.7E-33
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.1E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-19
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.7E-33
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-33
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-27
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.0E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-31
Sequence
Target Sequence 
>C. ELEGANS:183668_S_AT
gattgaaaatcggtttcccaattcaaaaattcgtgccagaagactggaaattggagattt
ctgtcccagccagctcactcccatcatttgccgcttagagcccggttttctcaaggaaat
ttccattgaatggtatggaaatcgagctgattttcatgaaatctacgatttggagcaatg
gaagcaggcgaaatcaattatcatcaagccggaatcttattcaacttcactttcttattt
gaatattccaattaaacaattattccatctttctcattttgatatttctgatgttacaat
ctcagttgatgatgcaattaggatcagagatattctcttgaaatccgctaacttggaaat
tgcatggatttattcgcgtgaaccaattctcccagaagttgtgaaagtattcgatgagga
tttcaatggcgattttacgacttctgagtaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGAAAATCGGTTTCCCAATTCA 379 431 255 Antisense
AATTGGAGATTTCTGTCCCAGCCAG 470 179 303 Antisense
GAAGCAGGCGAAATCAATTATCATC 688 341 435 Antisense
AATCAATTATCATCAAGCCGGAATC 665 165 446 Antisense
AAGCCGGAATCTTATTCAACTTCAC 650 147 460 Antisense
AACAATTATTCCATCTTTCTCATTT 258 135 509 Antisense
CCATCTTTCTCATTTTGATATTTCT 434 271 519 Antisense
TGATATTTCTGATGTTACAATCTCA 300 565 534 Antisense
TGTTACAATCTCAGTTGATGATGCA 411 561 546 Antisense
GGATTTATTCGCGTGAACCAATTCT 28 511 620 Antisense
GGCGATTTTACGACTTCTGAGTACA 386 541 682 Antisense
Sequence Source Affymetrix Proprietary Database