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[183667_at]

Description Y51A2A.9 /REP_DB=WormBase Gene ID /WP=CE20279 /TR=Q9U271 /GB=CAB63376.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 3.4
(-2.4)
A 		24.5
(3)
A 		1.1
(-3)
A 		9.5
(-0.8)
A 		23
B 13.4
(-1.6)
A 		7.8
(-2.3)
A 		1.6
(-3)
A 		51.7
(3)
A 		50
C 29.7
(0.4)
A 		3.9
(-2.7)
A 		1.4
(-3)
A 		51.8
(3)
A 		50
avr 15.5
(-0.7) 		12.1
(-1.2) 		1.4
(-3) 		37.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 4.1
(-0)
A 		6.3
(3)
A 		3.1
(-1.4)
A 		1.9
(-3)
A 		5.3
(1.6)
A 		5.2
(1.5)
A 		4
B 3.8
(-2.2)
A 		18.9
(2.3)
A 		1
(-3)
A 		4.6
(-1.9)
A 		4.6
(-1.9)
A 		21.1
(3)
A 		20
C 3.9
(-2.4)
A 		29.3
(3)
A 		1.3
(-3)
A 		2.6
(-2.7)
A 		5.2
(-2.2)
A 		17.3
(0.4)
A 		28
avr 3.9
(-2.2) 		18.2
(3) 		1.8
(-3) 		3
(-2.6) 		5
(-1.8) 		14.5
(1.6) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.2
(-1.9)
A 		5.3
(3)
A 		0.3
(-3)
A 		1.4
(-1.7)
A 		5
B 4.3
(-0.8)
A 		1.9
(-2.2)
A 		0.4
(-3)
A 		11
(3)
A 		11
C 9.8
(3)
A 		1.1
(-2.6)
A 		0.5
(-3)
A 		8.7
(2.3)
A 		9
avr 5.1
(1.3) 		2.8
(-0.8) 		0.4
(-3) 		7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-1.9)
A 		2.2
(3)
A 		0.7
(-2.3)
A 		0.5
(-3)
A 		1.6
(0.9)
A 		1.3
(-0.2)
A 		2
B 1.3
(-2.1)
A 		6.3
(1.8)
A 		0.2
(-3)
A 		1.2
(-2.2)
A 		1.9
(-1.7)
A 		7.9
(3)
A 		8
C 1.4
(-2.2)
A 		9
(3)
A 		0.3
(-3)
A 		0.5
(-2.9)
A 		1.7
(-2)
A 		5.8
(0.8)
A 		9
avr 1.2
(-2.1) 		5.8
(3) 		0.4
(-3) 		0.7
(-2.7) 		1.7
(-1.6) 		5
(2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183667_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14104
Sequence Type Exemplar sequence
Representative Public ID Y51A2A.9 NCBI
Target Description Y51A2A.9 /REP_DB=WormBase Gene ID /WP=CE20279 /TR=Q9U271 /GB=CAB63376.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075431
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000039483 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18313498:18314559:1 None
SNAP00000032747 ENSEMBL cdna:SNAP chromosome:CEL140:V:19771399:19778275:-1 None
NM_075431 NCBI Caenorhabditis elegans M162.8 (M162.8) mRNA, complete cds. None
Y51A2A.9 ENSEMBL cdna:pseudogene chromosome:CEL140:V:18313498:18314559:1 gene:Y51A2A.9 A 
M162.8 ENSEMBL cdna:known chromosome:CEL140:V:19774078:19776706:-1 gene:M162.8 None
GENEFINDER00000032754 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19774078:19776682:-1 None
GENEFINDER00000039483 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18313498:18314559:1 None
SNAP00000039475 ENSEMBL cdna:SNAP chromosome:CEL140:V:18311924:18314559:1 None
Y51A2A.9 ENSEMBL cdna:pseudogene chromosome:CEL140:V:18313498:18314559:1 gene:Y51A2A.9 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18313497-18314559(+) 100.0 100.0
chrV:19774097-19775172(-) 90.76 93.31
Public Domain and Genome References
Gene Title
Ensembl Y51A2A.9
M162.8
Entrez Gene 187491 Entrez gene
SwissProt Q9XUD2 EMBL-EBI
WormBase CE18898 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05251 Hypothetical protein M162.8 [Caenorhabditis elegans] ref|NP_507832.1| M162.8 [Caenorhabditis elegans] 0.0
blast CAB05251 Hypothetical protein M162.8 [Caenorhabditis elegans] ref|NP_507832.1| M162.8 [Caenorhabditis elegans] 2.0E-81
blast CAB05251 Hypothetical protein M162.8 [Caenorhabditis elegans] ref|NP_507832.1| M162.8 [Caenorhabditis elegans] 1.0E-65
blast NP_500676 Y9C9A.8 [Caenorhabditis elegans] gb|AAF60932.1| Hypothetical protein Y9C9A.8 [Caenorhabditis elegans] 4.0E-48
blast NP_500676 Y9C9A.8 [Caenorhabditis elegans] gb|AAF60932.1| Hypothetical protein Y9C9A.8 [Caenorhabditis elegans] 1.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-19
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.7E-33
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-19
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.7E-33
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.1E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-19
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.7E-33
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-33
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-27
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.0E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-31
Sequence
Target Sequence 
>C. ELEGANS:183667_AT
taagccatttttcaaccaatttcaagaaaaatttcagactcgtcctgcgaaaagtgtgcc
gaaagttgaggaattccctagataacagagatcccggattcaagcatgaaaagattgaaa
atcggtttcccaattcaaaaattcgtgccagaagactggaaattggagatttctgtccca
gccagctcactcccatcatttgccgcttagagcccggttttctcaaggaaatttccattg
aatggtatggaaatcgagctgattttcatgaaatctacgatttggagcaatggaagcagg
cgaaatcaattatcatcaagccggaatcttattcaacttcactttcttatttgaatattc
caattaaacaattattccatctttctcattttgatatttctgatgttacaatctcagttg
atgatgcaattaggatcagagatattctcttgaaatccgctaacttggaaattgcatgga
tttattcgcgtgaaccaattctcccagaagttgtgaaagtattcgatgaggatttcaatg
gcgattttacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCCATTTTTCAACCAATTTCAA 84 637 143 Antisense
GAAAAATTTCAGACTCGTCCTGCGA 676 355 168 Antisense
GACTCGTCCTGCGAAAAGTGTGCCG 90 375 179 Antisense
GTGTGCCGAAAGTTGAGGAATTCCC 537 485 196 Antisense
AAGTTGAGGAATTCCCTAGATAACA 103 155 205 Antisense
GATAACAGAGATCCCGGATTCAAGC 91 421 223 Antisense
AGAGATCCCGGATTCAAGCATGAAA 355 69 229 Antisense
CTCTTGAAATCCGCTAACTTGGAAA 524 1 589 Antisense
GAACCAATTCTCCCAGAAGTTGTGA 503 345 634 Antisense
GTATTCGATGAGGATTTCAATGGCG 268 453 661 Antisense
AGGATTTCAATGGCGATTTTACGAC 119 57 671 Antisense
Sequence Source Affymetrix Proprietary Database