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[183665_s_at]

Description F48G7.5 /REP_DB=WormBase Gene ID /WP=CE10762 /TR=O44585 /GB=AAG24121.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 56      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1247
1 2 3 4 range
A 77.6
(-2.6)
A 		679.4
(0.9)
P 		1047.3
(3)
P 		14.9
(-3)
A 		1032
B 73.5
(-2.8)
A 		732.1
(0.4)
P 		1258.7
(3)
P 		24.7
(-3)
A 		1234
C 82.6
(-2.5)
A 		737.1
(2.5)
P 		806.9
(3)
P 		11.9
(-3)
A 		795
avr 77.9
(-2.6) 		716.2
(1.1) 		1037.6
(3) 		17.2
(-3) 		1020

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 669
1 2 3 4 5 6 range
A 83.6
(-3)
A 		321.6
(-0.9)
P 		266
(-1.4)
P 		313.8
(-0.9)
P 		492.3
(0.7)
P 		752.4
(3)
P 		669
B 90.1
(-3)
A 		344.2
(-0)
P 		355.7
(0.1)
P 		336.7
(-0.1)
P 		413.4
(0.8)
P 		601.7
(3)
P 		512
C 95.9
(-3)
A 		351.3
(-0.6)
P 		217.9
(-1.8)
P 		282.9
(-1.2)
P 		391.8
(-0.2)
P 		729.4
(3)
P 		634
avr 89.9
(-3) 		339
(-0.5) 		279.9
(-1.1) 		311.1
(-0.8) 		432.5
(0.4) 		694.5
(3) 		605
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 28.2
(-2.4)
A 		147.5
(0.2)
P 		273.8
(3)
P 		2.2
(-3)
A 		272
B 23.4
(-2.6)
A 		180.8
(0.7)
P 		291.7
(3)
P 		5.3
(-3)
A 		286
C 27.3
(-2.5)
A 		211.9
(1.5)
P 		281.2
(3)
P 		2
(-3)
A 		279
avr 26.3
(-2.5) 		180.1
(0.8) 		282.2
(3) 		3.2
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 15.4
(-3)
A 		114.4
(0.5)
P 		57.9
(-1.5)
P 		79.6
(-0.7)
P 		148.5
(1.8)
P 		183.2
(3)
P 		168
B 31.4
(-3)
A 		114.6
(-0.4)
P 		86.4
(-1.3)
P 		89.2
(-1.2)
P 		167.9
(1.2)
P 		224.4
(3)
P 		193
C 35.5
(-3)
A 		107.2
(-0.9)
P 		55.5
(-2.4)
P 		56.9
(-2.4)
P 		126.8
(-0.4)
P 		244.2
(3)
P 		209
avr 27.4
(-3) 		112.1
(-0.3) 		66.6
(-1.8) 		75.2
(-1.5) 		147.7
(0.8) 		217.3
(3) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183665_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14936
Sequence Type Exemplar sequence
Representative Public ID F48G7.5 NCBI
Target Description F48G7.5 /REP_DB=WormBase Gene ID /WP=CE10762 /TR=O44585 /GB=AAG24121.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070866 NCBI Caenorhabditis elegans F48G7.5 (F48G7.5) mRNA, complete cds. 11/11 None
SNAP00000037290 ENSEMBL cdna:SNAP chromosome:CEL140:V:622099:622836:-1 11/11 None
F48G7.5 ENSEMBL cdna:known chromosome:CEL140:V:622017:622836:-1 gene:F48G7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037311 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:622098-622836(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48G7.5
Entrez Gene 178578 Entrez gene
SwissProt O44585 EMBL-EBI
WormBase CE10762 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24121 Hypothetical protein F48G7.5 [Caenorhabditis elegans] ref|NP_503267.1| F48G7.5 [Caenorhabditis elegans] 1.0E-111
blast AAG24124 Hypothetical protein F48G7.8 [Caenorhabditis elegans] ref|NP_503270.1| F48G7.8 [Caenorhabditis elegans] 3.0E-83
blast AAG24123 Hypothetical protein F48G7.7 [Caenorhabditis elegans] ref|NP_503269.1| F48G7.7 [Caenorhabditis elegans] 3.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 5.9E-17
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.5E-14
Sequence
Target Sequence 
>C. ELEGANS:183665_S_AT
taatctgcacatcttgggagccgtatttaagcacacccagtcttcaaggtttcatgtcga
aaattgctttcaatcatcttcactttttacaaatgatgcttcgagttgctcttcttactc
ttgccatcctctgggtaaacggggaaatccagttaggctgcaaaagtactccattcgcaa
aaggtgtcaatccatgtccaccaaagttcacagaattgcccggtgggctttgctgctccg
atgacgacgtctatatcatatcgggcaatggcaccacactttccccatcaacaaccacta
ctgctgctccatgccaagacaaattaaaccctgcgacaggagtcagcgattgcccaatgc
gacgcaatttgtgcacggatcctaactacagaaaggtgatgcacgagcaatgccctaaga
cttgcggattctgcactactgggtcgactaccaaggcgccagcgtgttctgataaagtgg
acccgagaactggggttagtgattgcccgcaaaagaagtatctatgcactgatccgacgt
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCTGCACATCTTGGGAGCCGTA 410 635 17 Antisense
GGGAGCCGTATTTAAGCACACCCAG 482 495 32 Antisense
GCACACCCAGTCTTCAAGGTTTCAT 224 317 47 Antisense
GCTTTCAATCATCTTCACTTTTTAC 156 305 82 Antisense
AATGATGCTTCGAGTTGCTCTTCTT 366 165 108 Antisense
CTCTTGCCATCCTCTGGGTAAACGG 391 213 134 Antisense
TAGGCTGCAAAAGTACTCCATTCGC 290 653 170 Antisense
TGTCAATCCATGTCCACCAAAGTTC 514 557 201 Antisense
AGAATTGCCCGGTGGGCTTTGCTGC 334 71 228 Antisense
GGTGATGCACGAGCAATGCCCTAAG 460 499 411 Antisense
GTATCTATGCACTGATCCGACGTAC 6 453 534 Antisense
Sequence Source Affymetrix Proprietary Database