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[183664_at]

Description F17E9.3 /REP_DB=WormBase Gene ID /WP=CE07070 /TR=O61523 /GB=AAC05106.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 1.1
(-3)
A 		4.2
(-2.6)
A 		4.7
(-2.5)
A 		44.1
(3)
A 		43
B 18.3
(-0.8)
A 		32.5
(3)
A 		13.2
(-2.2)
A 		10.1
(-3)
A 		22
C 26.6
(2.7)
A 		3.5
(-3)
A 		12.9
(-0.7)
A 		27.8
(3)
A 		24
avr 15.3
(-1.2) 		13.4
(-1.9) 		10.3
(-3) 		27.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 1.3
(-3)
A 		1.9
(-2.9)
A 		3.9
(-2.5)
A 		33.8
(3)
A 		31.3
(2.5)
M 		15.8
(-0.3)
A 		33
B 23.8
(3)
A 		2.3
(-2.9)
A 		15.6
(0.7)
A 		3.7
(-2.5)
A 		2
(-3)
A 		4.7
(-2.3)
A 		22
C 4
(-2.4)
A 		18
(0.4)
A 		20.5
(0.9)
A 		30.6
(3)
A 		3.8
(-2.5)
A 		1.1
(-3)
A 		30
avr 9.7
(-2) 		7.4
(-2.9) 		13.3
(-0.6) 		22.7
(3) 		12.4
(-1) 		7.2
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.4
(-3)
A 		0.9
(-2.5)
A 		1.2
(-2.2)
A 		6.5
(3)
A 		6
B 5.8
(0.7)
A 		8
(3)
A 		3.1
(-2.1)
A 		2.2
(-3)
A 		6
C 8.8
(3)
A 		1
(-3)
A 		4.5
(-0.3)
A 		4.7
(-0.2)
A 		8
avr 5
(3) 		3.3
(-1.9) 		2.9
(-3) 		4.5
(1.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.7
(-2.7)
A 		0.8
(-2.6)
A 		8.6
(2.5)
A 		9.4
(3)
M 		3.8
(-0.7)
A 		9
B 8.3
(3)
A 		0.8
(-3)
A 		3.8
(-0.6)
A 		1
(-2.8)
A 		0.8
(-3)
A 		1.8
(-2.2)
A 		8
C 1.5
(-1.9)
A 		5.5
(2.3)
A 		5.2
(2)
A 		6.2
(3)
A 		1.2
(-2.2)
A 		0.4
(-3)
A 		6
avr 3.3
(-0.6) 		2.3
(-2.5) 		3.3
(-0.6) 		5.3
(3) 		3.8
(0.3) 		2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183664_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8920
Sequence Type Exemplar sequence
Representative Public ID F17E9.3 NCBI
Target Description F17E9.3 /REP_DB=WormBase Gene ID /WP=CE07070 /TR=O61523 /GB=AAC05106.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069013(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069013 NCBI Caenorhabditis elegans F17E9.3 (F17E9.3) mRNA, complete cds. 9/11 None
SNAP00000000490 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8354856:8355415:1 11/11 None
F17E9.3 ENSEMBL cdna:known chromosome:CEL140:IV:8354856:8355415:1 gene:F17E9.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8354861-8355421(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17E9.3
Entrez Gene 184619 Entrez gene
SwissProt O61523 EMBL-EBI
WormBase CE34817 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC05106 Hypothetical protein F17E9.3 [Caenorhabditis elegans] ref|NP_501414.2| F17E9.3 [Caenorhabditis elegans] 2.0E-78
blast AAC05106 Hypothetical protein F17E9.3 [Caenorhabditis elegans] ref|NP_501414.2| F17E9.3 [Caenorhabditis elegans] 2.0E-75
blast AAK39266 Hypothetical protein R11E3.4 [Caenorhabditis elegans] ref|NP_500642.1| R11E3.4 [Caenorhabditis elegans] 9.0E-13
blast AAK39266 Hypothetical protein R11E3.4 [Caenorhabditis elegans] ref|NP_500642.1| R11E3.4 [Caenorhabditis elegans] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:183664_AT
taagaatctttgctgtttccctgtgtattctctttttcatacatttcccagcttctgaat
cagttctaaccaaattccgattcaatggatctttcacgtgctccaagaaggtggctccgt
ttgttcagaaagtaacagtttacgagcatgactacttaacttttgatgataaattagaag
aggttacccttttccgaacggattctccggatcgtatgagttatcaatttcgttttgaag
aagacggcgatggaaaaccggatgatgaattttatgagatttatatggagatttggaaca
cttgtatgattcctactgaaaacaacagagtttcgaaatactggttcaaaacggaactgc
cagttattgatgggtatatctttttttattttcacttagtcgcaaaccggctgaatttca
gaacactctatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGAATCTTTGCTGTTTCCCTGTG 697 637 17 Antisense
TTCTCTTTTTCATACATTTCCCAGC 239 691 44 Antisense
ATTTCCCAGCTTCTGAATCAGTTCT 388 17 59 Antisense
TCAGTTCTAACCAAATTCCGATTCA 333 623 76 Antisense
GATTCAATGGATCTTTCACGTGCTC 152 431 95 Antisense
TCACGTGCTCCAAGAAGGTGGCTCC 386 627 110 Antisense
CGAGCATGACTACTTAACTTTTGAT 344 251 159 Antisense
TTCCGAACGGATTCTCCGGATCGTA 77 697 208 Antisense
GAACACTTGTATGATTCCTACTGAA 530 351 312 Antisense
TTTCACTTAGTCGCAAACCGGCTGA 445 671 406 Antisense
GCTGAATTTCAGAACACTCTATGCT 543 295 426 Antisense
Sequence Source Affymetrix Proprietary Database