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[183663_s_at]

Description Y41C4A.8 /REP_DB=WormBase Gene ID /WP=CE20248 /TR=Q9XWU5 /GB=CAA21547.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 71      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 63      6grp_total > 71      4grp_total > 49      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 411.2
(-3)
P 		720.5
(3)
P 		510.8
(-1.1)
P 		638
(1.4)
P 		309
B 325
(-3)
P 		466.6
(0.1)
P 		600.2
(3)
P 		349.3
(-2.5)
P 		275
C 503.2
(2.2)
P 		481.5
(1.5)
P 		527.4
(3)
P 		340
(-3)
P 		187
avr 413.1
(-3) 		556.2
(3) 		546.1
(2.6) 		442.4
(-1.8) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 299
(-3)
P 		481.1
(-0.8)
P 		680.1
(1.7)
P 		787.3
(3)
P 		533.3
(-0.1)
P 		351.2
(-2.4)
P 		488
B 303.8
(-3)
P 		540.8
(0.1)
P 		660.7
(1.7)
P 		757
(3)
P 		554.1
(0.3)
P 		405.2
(-1.7)
P 		453
C 308.2
(-3)
P 		519.4
(-0.3)
P 		543
(-0)
P 		779
(3)
P 		494.3
(-0.6)
P 		357.3
(-2.4)
P 		471
avr 303.7
(-3) 		513.8
(-0.3) 		627.9
(1.1) 		774.4
(3) 		527.2
(-0.2) 		371.2
(-2.1) 		471
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 149.7
(2.4)
P 		156.4
(3)
P 		133.5
(0.8)
P 		93.4
(-3)
P 		63
B 103.6
(-0.3)
P 		115.2
(0.8)
P 		139.1
(3)
P 		74.4
(-3)
P 		65
C 166.6
(2.2)
P 		138.4
(0.8)
P 		183.8
(3)
P 		57.3
(-3)
P 		127
avr 140
(2.1) 		136.7
(1.8) 		152.1
(3) 		75
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 55.1
(-3)
P 		171.1
(1.8)
P 		148.1
(0.9)
P 		199.7
(3)
P 		160.9
(1.4)
P 		85.5
(-1.7)
P 		145
B 105.7
(-3)
P 		180
(0.7)
P 		160.4
(-0.3)
P 		200.5
(1.8)
P 		225.1
(3)
P 		151.1
(-0.7)
P 		119
C 114.2
(-3)
P 		158.5
(2.8)
P 		138.2
(0.2)
P 		156.7
(2.6)
P 		159.9
(3)
P 		119.6
(-2.3)
P 		46
avr 91.7
(-3) 		169.9
(2) 		148.9
(0.7) 		185.6
(3) 		182
(2.8) 		118.7
(-1.3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183663_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7849
Sequence Type Exemplar sequence
Representative Public ID Y41C4A.8 NCBI
Target Description Y41C4A.8 /REP_DB=WormBase Gene ID /WP=CE20248 /TR=Q9XWU5 /GB=CAA21547.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067114(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067114 NCBI Caenorhabditis elegans Y41C4A.8 (Y41C4A.8) mRNA, complete cds. 11/11 None
SNAP00000034889 ENSEMBL cdna:SNAP chromosome:CEL140:III:11706919:11708696:-1 11/11 None
GENEFINDER00000034900 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11706919:11708696:-1 11/11 None
Y41C4A.8 ENSEMBL cdna:known chromosome:CEL140:III:11706881:11708696:-1 gene:Y41C4A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11706914-11708692(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41C4A.8
Entrez Gene 176603 Entrez gene
SwissProt Q9XWU5 EMBL-EBI
WormBase CE20248 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1632410_AT dm
DROSGENOME1:142691_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA21547 Hypothetical protein Y41C4A.8 [Caenorhabditis elegans] ref|NP_499515.1| Y41C4A.8 [Caenorhabditis elegans] 1.0E-137
blast CAE67675 Hypothetical protein CBG13238 [Caenorhabditis briggsae] 1.0E-117
blast XP_391879 PREDICTED: similar to ENSANGP00000021657 [Apis mellifera] 3.0E-43
Sequence
Target Sequence 
>C. ELEGANS:183663_S_AT
gcaaaatagctcttacgacccgaaaaaggatcaggtgatgcatagatgtatggatgagac
gattgattatgaggatcgaattcctattcgaggagaccaccgtccaaactgggcccgctt
cggcgaatacctgtacgtacctgttcagcggtggcttcataacttggagcacggctcaat
tgtgctcctgtaccatccgtgtgtcgacttggacgagctgaacaagttgaggcagctggt
gacgtcatgtatctatcgtcacgttattacgccgtatatcaagcttacggcagagaggcc
actggcccttgtcggatggggatcacggctggaaatgaactcggtcgacgagaagaaagt
tgttgaattcatgaaaaaatacggaaaccgtgcgccagaagagattactcgcgacggttt
gtatgacgagtacctgctcaaggaggcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAATAGCTCTTACGACCCGAAA 282 319 222 Antisense
TATTCGAGGAGACCACCGTCCAAAC 666 663 306 Antisense
TACCTGTACGTACCTGTTCAGCGGT 264 651 349 Antisense
TCAGCGGTGGCTTCATAACTTGGAG 432 625 366 Antisense
GCACGGCTCAATTGTGCTCCTGTAC 467 315 390 Antisense
TGTACCATCCGTGTGTCGACTTGGA 34 559 410 Antisense
GAGGCAGCTGGTGACGTCATGTATC 635 405 450 Antisense
ATCTATCGTCACGTTATTACGCCGT 68 31 472 Antisense
CTTACGGCAGAGAGGCCACTGGCCC 84 217 505 Antisense
CACTGGCCCTTGTCGGATGGGGATC 273 197 521 Antisense
GACGAGTACCTGCTCAAGGAGGCGA 130 379 646 Antisense
Sequence Source Affymetrix Proprietary Database