[Home] | [Total List]

[183662_at]

Description T12A2.5 /REP_DB=WormBase Gene ID /WP=CE01398 /TR=Q22414 /GB=AAC24444.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 3.5
(-3)
A 		27.2
(-0.3)
A 		6.9
(-2.6)
A 		56
(3)
A 		53
B 61.9
(3)
A 		16.4
(-2)
A 		7.5
(-3)
A 		24.3
(-1.1)
A 		54
C 5.7
(-3)
A 		8
(-2.8)
A 		15.4
(-2.3)
A 		87.9
(3)
A 		82
avr 23.7
(-1.2) 		17.2
(-2.1) 		9.9
(-3) 		56.1
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 21.7
(-1.8)
A 		21.2
(-1.9)
A 		55.1
(3)
A 		16
(-2.6)
A 		32.9
(-0.2)
A 		13.5
(-3)
A 		42
B 6.7
(-2.7)
A 		18.4
(-0.1)
A 		20.5
(0.4)
A 		5.3
(-3)
A 		32
(3)
A 		24.5
(1.3)
A 		27
C 4
(-2.8)
A 		56.2
(3)
A 		5.1
(-2.7)
A 		2
(-3)
A 		37.1
(0.9)
A 		44.6
(1.7)
A 		54
avr 10.8
(-2.3) 		31.9
(2.5) 		26.9
(1.4) 		7.8
(-3) 		34
(3) 		27.5
(1.5) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.3
(-3)
A 		5.9
(1)
A 		1.8
(-2.6)
A 		8.2
(3)
A 		7
B 19.7
(3)
A 		4
(-2.2)
A 		1.7
(-3)
A 		5.2
(-1.8)
A 		18
C 1.9
(-3)
A 		2.3
(-2.8)
A 		5.4
(-1.4)
A 		14.8
(3)
A 		13
avr 7.6
(1.3) 		4.1
(-2) 		3
(-3) 		9.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4
(-2.5)
A 		7.5
(-0.1)
A 		12
(3)
A 		4.1
(-2.4)
A 		9.9
(1.6)
A 		3.3
(-3)
A 		9
B 2.3
(-2.5)
A 		6.1
(-0.6)
A 		5
(-1.1)
A 		1.4
(-3)
A 		13
(3)
A 		9.1
(1)
A 		12
C 1.5
(-2.6)
A 		17.1
(3)
A 		1.3
(-2.7)
A 		0.4
(-3)
A 		12
(1.2)
A 		14.9
(2.2)
A 		17
avr 2.6
(-2.6) 		10.2
(2.1) 		6.1
(-0.4) 		2
(-3) 		11.6
(3) 		9.1
(1.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7513
Sequence Type Exemplar sequence
Representative Public ID T12A2.5 NCBI
Target Description T12A2.5 /REP_DB=WormBase Gene ID /WP=CE01398 /TR=Q22414 /GB=AAC24444.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065956(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065956 NCBI Caenorhabditis elegans T12A2.5 (T12A2.5) mRNA, complete cds. 11/11 None
GENEFINDER00000026141 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6224557:6236927:-1 11/11 None
SNAP00000026121 ENSEMBL cdna:SNAP chromosome:CEL140:III:6233657:6236631:-1 11/11 None
T12A2.5 ENSEMBL cdna:known chromosome:CEL140:III:6233657:6239275:-1 gene:T12A2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6233655-6239274(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12A2.5
Entrez Gene 188433 Entrez gene
SwissProt Q22414 EMBL-EBI
WormBase CE01398 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24444 Hypothetical protein T12A2.5 [Caenorhabditis elegans] ref|NP_498357.1| T12A2.5 [Caenorhabditis elegans] 0.0
blast AAC24452 Hypothetical protein T12A2.15a [Caenorhabditis elegans] ref|NP_741181.1| T12A2.15a [Caenorhabditis elegans] 0.0
blast CAE70749 Hypothetical protein CBG17495 [Caenorhabditis briggsae] 0.0
blast AAC24444 Hypothetical protein T12A2.5 [Caenorhabditis elegans] ref|NP_498357.1| T12A2.5 [Caenorhabditis elegans] 1.0E-161
blast AAC24444 Hypothetical protein T12A2.5 [Caenorhabditis elegans] ref|NP_498357.1| T12A2.5 [Caenorhabditis elegans] 1.0E-153
blast CAE70746 Hypothetical protein CBG17492 [Caenorhabditis briggsae] 1.0E-141
blast CAE70746 Hypothetical protein CBG17492 [Caenorhabditis briggsae] 3.0E-74
blast AAC24445 Hypothetical protein T12A2.6 [Caenorhabditis elegans] ref|NP_498359.2| T12A2.6 [Caenorhabditis elegans] 1.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 6.6E-30
Pfam IPR000008 EMBL-EBI C2 domain 1.2E-13
Pfam IPR000008 EMBL-EBI C2 domain 2.6E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000026141 3 12-31,632-654,661-678
Sequence
Target Sequence 
>C. ELEGANS:183662_AT
atttctgtagacactgcatatcttctccgttacgtgcgaagtgttatcactattactgaa
acaagaaattatagacactttatggataatctagttgaattcactcaactatcccgtgat
aataagttcagagatgtttggaaagcactggaagatgcaacacgacttgtaagcattcac
gataatgatctcattgctttattttctggacttaacggaacagtcaccggatcttatgaa
gaaatattcctcgcccttaatatgcttttggagggtgagcagcaatcaaaaacagaagct
aaatgtcaattcatcaatgagtttttcactggactgtcggacactgacggtgtaatcaaa
gcaattggtattccggtggctcagatgcacaaatggatggattcaactgaatacgtggat
gctcttgtagatctgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTGTAGACACTGCATATCTTC 178 17 2377 Antisense
ATATCTTCTCCGTTACGTGCGAAGT 236 21 2394 Antisense
GAATTCACTCAACTATCCCGTGATA 84 325 2473 Antisense
GCAACACGACTTGTAAGCATTCACG 474 319 2533 Antisense
GATCTCATTGCTTTATTTTCTGGAC 245 419 2563 Antisense
GGAACAGTCACCGGATCTTATGAAG 321 529 2593 Antisense
TTCCTCGCCCTTAATATGCTTTTGG 210 699 2623 Antisense
TGAGTTTTTCACTGGACTGTCGGAC 560 565 2694 Antisense
GGACTGTCGGACACTGACGGTGTAA 641 519 2707 Antisense
TTGGTATTCCGGTGGCTCAGATGCA 468 707 2741 Antisense
ACGTGGATGCTCTTGTAGATCTGTT 92 95 2789 Antisense
Sequence Source Affymetrix Proprietary Database