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[183661_at]

Description R02F2.1 /REP_DB=WormBase Gene ID /WP=CE00688 /TR=Q21654 /GB=AAA50718.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 15      6grp_total > 32      4grp_total > 12      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8563
1 2 3 4 range
A 7863.7
(-1.1)
P 		6340.3
(-2.2)
P 		5186
(-3)
P 		13447.7
(3)
P 		8262
B 7995.6
(0.1)
P 		6510.6
(-1.5)
P 		5059.7
(-3)
P 		10736.9
(3)
P 		5677
C 7288.4
(-0.6)
P 		6125.6
(-1.7)
P 		4884.3
(-3)
P 		10842.3
(3)
P 		5958
avr 7715.9
(-0.6) 		6325.5
(-1.8) 		5043.3
(-3) 		11675.6
(3) 		6632

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3493
1 2 3 4 5 6 range
A 6400.3
(3)
P 		5776.2
(1.4)
P 		5319.1
(0.1)
P 		5594.1
(0.9)
P 		5352.4
(0.2)
P 		4130.2
(-3)
P 		2270
B 5049.5
(1.4)
P 		5618.8
(3)
P 		5468.2
(2.6)
P 		5543.6
(2.8)
P 		4869.1
(0.9)
P 		3435.6
(-3)
P 		2183
C 5752.7
(2.7)
P 		5453.9
(2.1)
P 		5890.4
(3)
P 		5293.1
(1.8)
P 		5149
(1.5)
P 		2907.6
(-3)
P 		2983
avr 5734.2
(3) 		5616.3
(2.7) 		5559.2
(2.5) 		5476.9
(2.3) 		5123.5
(1.4) 		3491.1
(-3) 		2243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1691
1 2 3 4 range
A 2863.2
(3)
P 		1376.3
(-2.9)
P 		1355.7
(-3)
P 		1968.5
(-0.6)
P 		1508
B 2549.7
(3)
P 		1608
(-1.1)
P 		1172.4
(-3)
P 		2288
(1.9)
P 		1377
C 2412.7
(3)
P 		1761.1
(-2.5)
P 		1702.3
(-3)
P 		1828.2
(-1.9)
P 		710
avr 2608.5
(3) 		1581.8
(-2.1) 		1410.1
(-3) 		2028.2
(0.1) 		1198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1159
1 2 3 4 5 6 range
A 1179.9
(-2)
P 		2054.3
(3)
P 		1158.4
(-2.1)
P 		1418.8
(-0.6)
P 		1615.1
(0.5)
P 		1005.6
(-3)
P 		1049
B 1757
(1.1)
P 		1870.3
(2.1)
P 		1327.8
(-2.6)
P 		1468.3
(-1.4)
P 		1978.2
(3)
P 		1281.1
(-3)
P 		697
C 2132.3
(3)
P 		1664.1
(0.6)
P 		1499.2
(-0.3)
P 		1064.5
(-2.5)
P 		1666.1
(0.6)
P 		973.3
(-3)
P 		1159
avr 1689.7
(1.7) 		1862.9
(3) 		1328.5
(-1.1) 		1317.2
(-1.2) 		1753.1
(2.2) 		1086.7
(-3) 		776
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6687
Sequence Type Exemplar sequence
Representative Public ID R02F2.1 NCBI
Target Description R02F2.1 /REP_DB=WormBase Gene ID /WP=CE00688 /TR=Q21654 /GB=AAA50718.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065775(11), NM_065774(11), NM_181947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065775 NCBI Caenorhabditis elegans R02F2.1a (R02F2.1) mRNA, complete cds. 11/11 None
NM_065774 NCBI Caenorhabditis elegans R02F2.1b (R02F2.1) mRNA, complete cds. 11/11 None
NM_181947 NCBI Caenorhabditis elegans R02F2.1d (R02F2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000033084 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5501929:5505698:1 11/11 None
SNAP00000033074 ENSEMBL cdna:SNAP chromosome:CEL140:III:5504410:5505698:1 11/11 None
R02F2.1a.3 ENSEMBL cdna:known chromosome:CEL140:III:5501388:5506667:1 gene:R02F2.1 11/11 A 
R02F2.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:5501817:5506667:1 gene:R02F2.1 11/11 A 
R02F2.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:5501846:5506667:1 gene:R02F2.1 11/11 A 
R02F2.1b ENSEMBL cdna:known chromosome:CEL140:III:5501929:5505698:1 gene:R02F2.1 11/11 None
R02F2.1d.2 ENSEMBL cdna:known chromosome:CEL140:III:5504585:5505698:1 gene:R02F2.1 11/11 None
R02F2.1d.1 ENSEMBL cdna:known chromosome:CEL140:III:5504591:5505698:1 gene:R02F2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_181946 5/11 Cross Hyb Matching Probes None
R02F2.1c 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175757 4 3 NM_065774 183661_at (11)
NM_065775 174817_at (11), 183661_at (11)
NM_181947 183661_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5504493-5505697(+) 100.0 100.0
Public Domain and Genome References
Ensembl R02F2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL06043 Hypothetical protein R02F2.1b [Caenorhabditis elegans] ref|NP_498175.1| R02F2.1b [Caenorhabditis elegans] 1.0E-153
blast AAL06042 Hypothetical protein R02F2.1a [Caenorhabditis elegans] ref|NP_498176.1| R02F2.1a [Caenorhabditis elegans] 1.0E-152
blast AAL06043 Hypothetical protein R02F2.1b [Caenorhabditis elegans] ref|NP_498175.1| R02F2.1b [Caenorhabditis elegans] 1.0E-150
blast AAL06042 Hypothetical protein R02F2.1a [Caenorhabditis elegans] ref|NP_498176.1| R02F2.1a [Caenorhabditis elegans] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 1.2E-10
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 1.2E-10
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 1.2E-10
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 1.2E-10
Sequence
Target Sequence 
>C. ELEGANS:183661_AT
cgaagaagacgctccagttttcctcggtcgccttcgtctcgagtacagcgcgcaagagct
gaagcgcatggaaatcaagatcctggaggtgctccgctgggatgctcaccttccgaacct
caatcgattcgttgaatgtctgctatcagagctcgacgcggctttccttttgccttcaat
caaaaagcacttggatttcctgctttgcgactccacgctgacatctaacttccgatggag
tgtgctagcgctgtccaccgtctcattgctcgtcgaggctaccaacaaacactggcaata
cccaattaatgctttggctcggctctgcaagattccaatgagcgaagtcaatcgctgccg
tgtgaaggtctccaatctctggtctcgccacgtacttccaatgccgtcaacattccatct
tctggccgatctggacgatcaagacagcgacatggacgtcgactatccgctcgcctacga
ctcatcaccccatccccaggctccctctgctgaagcctccgagtacatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAAGAAGACGCTCCAGTTTTCCTC 164 253 372 Antisense
ACCTTCCGAACCTCAATCGATTCGT 418 37 479 Antisense
AGCACTTGGATTTCCTGCTTTGCGA 22 77 557 Antisense
TCCGATGGAGTGTGCTAGCGCTGTC 445 595 602 Antisense
GCTCGTCGAGGCTACCAACAAACAC 650 299 639 Antisense
AGTCAATCGCTGCCGTGTGAAGGTC 359 61 717 Antisense
TGTGAAGGTCTCCAATCTCTGGTCT 253 557 732 Antisense
TGCCGTCAACATTCCATCTTCTGGC 127 585 773 Antisense
ATCTTCTGGCCGATCTGGACGATCA 85 31 788 Antisense
GCGACATGGACGTCGACTATCCGCT 563 289 818 Antisense
CTGCTGAAGCCTCCGAGTACATCAC 351 237 878 Antisense
Sequence Source Affymetrix Proprietary Database