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[183660_at]

Description C08F11.2 /REP_DB=WormBase Gene ID /WP=CE17380 /TR=O62048 /GB=CAB05673.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 11.8
(3)
A 		3.3
(-2.9)
A 		5.5
(-1.3)
A 		3.1
(-3)
A 		9
B 16.5
(0.7)
A 		24.8
(3)
M 		2.7
(-3)
A 		22.1
(2.3)
A 		22
C 18.8
(-1.4)
A 		2.5
(-3)
A 		2.3
(-3)
A 		63.1
(3)
P 		61
avr 15.7
(-0.2) 		10.2
(-1.4) 		3.5
(-3) 		29.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 18.7
(-0.6)
A 		11.7
(-3)
A 		24.4
(1.4)
A 		12.8
(-2.6)
A 		11.8
(-3)
A 		29.1
(3)
A 		17
B 13.9
(-0.9)
A 		34.4
(3)
P 		5
(-2.6)
A 		3
(-3)
A 		22.6
(0.7)
A 		16.7
(-0.4)
A 		31
C 0.9
(-3)
A 		27.3
(1.3)
A 		23.9
(0.7)
A 		37.8
(3)
A 		19
(-0.1)
A 		11
(-1.4)
A 		37
avr 11.2
(-3) 		24.5
(3) 		17.8
(-0) 		17.9
(0) 		17.8
(-0) 		18.9
(0.5) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.3
(3)
A 		0.7
(-2.7)
A 		1.4
(-1.6)
A 		0.5
(-3)
A 		4
B 5.3
(2.1)
A 		6.1
(3)
M 		0.6
(-3)
A 		4.7
(1.5)
A 		6
C 6.2
(0.3)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		10.6
(3)
P 		10
avr 5.3
(3) 		2.5
(-0.8) 		0.9
(-3) 		5.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.4
(-2.7)
A 		4.1
(-1.6)
A 		5.3
(0.2)
A 		3.2
(-3)
A 		3.6
(-2.4)
A 		7.1
(3)
A 		4
B 4.8
(-0.7)
A 		11.4
(3)
P 		1.2
(-2.8)
A 		0.8
(-3)
A 		9.2
(1.8)
A 		6.2
(0.1)
A 		11
C 0.3
(-3)
A 		8.3
(3)
A 		6.1
(1.4)
A 		7.6
(2.5)
A 		6.1
(1.4)
A 		3.7
(-0.5)
A 		8
avr 2.8
(-3) 		7.9
(3) 		4.2
(-1.4) 		3.9
(-1.7) 		6.3
(1.1) 		5.7
(0.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9631
Sequence Type Exemplar sequence
Representative Public ID C08F11.2 NCBI
Target Description C08F11.2 /REP_DB=WormBase Gene ID /WP=CE17380 /TR=O62048 /GB=CAB05673.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070227 NCBI Caenorhabditis elegans C08F11.2 (C08F11.2) mRNA, complete cds. 11/11 None
C08F11.2 ENSEMBL cdna:known chromosome:CEL140:IV:13621931:13623103:1 gene:C08F11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042606 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13621936-13623109(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F11.2
Entrez Gene 182418 Entrez gene
SwissProt O62048 EMBL-EBI
WormBase CE17380 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05673 Hypothetical protein C08F11.2 [Caenorhabditis elegans] ref|NP_502628.1| C08F11.2 [Caenorhabditis elegans] 1.0E-171
blast CAE56842 Hypothetical protein CBG24669 [Caenorhabditis briggsae] 1.0E-33
blast CAB60310 Hypothetical protein Y105C5B.1 [Caenorhabditis elegans] ref|NP_502890.2| Y105C5B.1 [Caenorhabditis elegans] 4.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502628.1 7 20-42,62-84,104-126,141-163,190-212,232-251,264-286
C08F11.2 7 20-42,62-84,104-126,141-163,190-212,232-251,264-286
Sequence
Target Sequence 
>C. ELEGANS:183660_AT
gttttttctcaagtatgtctttctcttgtatgatttcccttcagtttctatcagttattc
aacgtttggttatattatacctgccaaagttcaaacgggtttttatgggttatcaactca
gattttggattgttggtatttatatatcaaccttccattttggttggatagaaataaatt
gtcgggcaactaattgtaaaaaagaaaatttggcggaatgtatatgtgagagcaggaaaa
aagagtttttattattcggttacactgcaatttttagttcaatgacttttataactggtt
gcttttattatcatatgcaaaagctgattgcaaagttgtcaccggatattaaggttaaca
acctgatatatcaattttttcctatttattttgttcaaatgctgtacattttcacatgcg
cagtacgaatttttacatacgaactatctggacatgattcgatcgaagcagttatgcaat
gtgtgaacatgattgtaccatatctaataccaacaatcatttccatttcatatactgctt
caagagaaaatcttcgagcgattttatcttcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTTTCTCAAGTATGTCTTTCTC 484 449 332 Antisense
GTCTTTCTCTTGTATGATTTCCCTT 201 469 348 Antisense
ATTTCCCTTCAGTTTCTATCAGTTA 412 17 364 Antisense
TATTATACCTGCCAAAGTTCAAACG 86 661 404 Antisense
GTATTTATATATCAACCTTCCATTT 683 451 467 Antisense
GTTTTTATTATTCGGTTACACTGCA 417 449 576 Antisense
GCTGATTGCAAAGTTGTCACCGGAT 694 295 654 Antisense
TGCTGTACATTTTCACATGCGCAGT 351 583 731 Antisense
GAACTATCTGGACATGATTCGATCG 699 349 772 Antisense
ATTTCCATTTCATATACTGCTTCAA 597 17 850 Antisense
ATCTTCGAGCGATTTTATCTTCTTT 439 31 881 Antisense
Sequence Source Affymetrix Proprietary Database