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[183659_at]

Description F01F1.4 /REP_DB=WormBase Gene ID /WP=CE01230 /TR=Q19088 /GB=AAC46638.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 83      6grp_total > 67      4grp_total > 55      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 562.2
(3)
P 		382.4
(-2.2)
P 		416.2
(-1.2)
P 		354.4
(-3)
P 		208
B 644.4
(3)
P 		248.4
(-3)
P 		408.3
(-0.6)
P 		405
(-0.6)
P 		396
C 573.3
(3)
P 		273.5
(-3)
P 		503.6
(1.6)
P 		371
(-1)
P 		300
avr 593.3
(3) 		301.4
(-3) 		442.7
(-0.1) 		376.8
(-1.5) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 374.4
(-2.4)
P 		522.9
(1.1)
P 		399.3
(-1.8)
P 		429.8
(-1.1)
P 		347.7
(-3)
P 		606.3
(3)
P 		259
B 452.3
(-0.3)
P 		349
(-3)
P 		475.1
(0.3)
P 		383.9
(-2.1)
P 		417.4
(-1.2)
P 		579.6
(3)
P 		231
C 565.8
(0.7)
P 		345.8
(-3)
P 		497.3
(-0.5)
P 		416.2
(-1.8)
P 		489
(-0.6)
P 		706.3
(3)
P 		361
avr 464.2
(-1.4) 		405.9
(-3) 		457.2
(-1.6) 		410
(-2.9) 		418
(-2.7) 		630.7
(3) 		225
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 204.7
(3)
P 		83
(-1.8)
P 		108.8
(-0.8)
P 		51.9
(-3)
P 		153
B 205.5
(3)
P 		61.4
(-3)
P 		94.6
(-1.6)
P 		86.3
(-2)
P 		144
C 189.8
(3)
P 		78.6
(-2.2)
P 		175.5
(2.3)
P 		62.6
(-3)
P 		127
avr 200
(3) 		74.3
(-2.7) 		126.3
(-0.3) 		66.9
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 69
(-3)
P 		186
(3)
P 		86.9
(-2.1)
P 		109
(-0.9)
P 		104.9
(-1.2)
P 		147.6
(1)
P 		117
B 157.4
(-0.1)
P 		116.2
(-2.2)
P 		115.4
(-2.3)
P 		101.7
(-3)
P 		169.6
(0.6)
P 		216.1
(3)
P 		114
C 209.7
(2)
P 		105.5
(-2.1)
P 		126.6
(-1.3)
P 		83.7
(-3)
P 		158.2
(-0.1)
P 		236.4
(3)
P 		153
avr 145.4
(-0.2) 		135.9
(-0.8) 		109.6
(-2.3) 		98.1
(-3) 		144.2
(-0.3) 		200
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183659_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7895
Sequence Type Exemplar sequence
Representative Public ID F01F1.4 NCBI
Target Description F01F1.4 /REP_DB=WormBase Gene ID /WP=CE01230 /TR=Q19088 /GB=AAC46638.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065865 NCBI Caenorhabditis elegans RABaptiN (rab effector) family member (rabn-5) (rabn-5) mRNA, complete cds. 11/11 None
SNAP00000009922 ENSEMBL cdna:SNAP chromosome:CEL140:III:5864507:5868159:1 11/11 None
GENEFINDER00000009934 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5864507:5866256:1 11/11 None
F01F1.4 ENSEMBL cdna:known chromosome:CEL140:III:5864496:5866406:1 gene:F01F1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5864505-5866255(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rabn-5
Ensembl F01F1.4
Entrez Gene 175823 Entrez gene
SwissProt Q19088 EMBL-EBI
WormBase CE01230 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23906.1.S1_AT similar to rabaptin, RAB GTPase binding effector protein 1 cfa
DROSOPHILA_2:1640691_AT dm
DROSGENOME1:154147_AT dm
CHICKEN:GGA.549.1.S1_AT rabaptin, RAB GTPase binding effector protein 1 gga
HG-U95AV2:32742_S_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133A:203223_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133A_2:203223_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133_PLUS_2:203223_AT rabaptin, RAB GTPase binding effector protein 1 hs
HU35KSUBA:W58520_AT rabaptin, RAB GTPase binding effector protein 1 hs
HU35KSUBA:RC_AA412174_S_AT rabaptin, RAB GTPase binding effector protein 1 hs
HUGENEFL:X91141_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133_PLUS_2:214552_S_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133A_2:214552_S_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-FOCUS:214552_S_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133A:214552_S_AT rabaptin, RAB GTPase binding effector protein 1 hs
U133_X3P:HS.326056.1.S1_3P_A_AT rabaptin, RAB GTPase binding effector protein 1 hs
U133_X3P:HS.250535.1.A2_3P_AT rabaptin, RAB GTPase binding effector protein 1 hs
U133_X3P:HS.250535.1.A1_3P_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133_PLUS_2:225064_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133B:225064_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133_PLUS_2:225092_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133B:225092_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U95AV2:32741_AT rabaptin, RAB GTPase binding effector protein 1 hs
HG-U95AV2:40804_AT Rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133_PLUS_2:214192_AT Rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133A:214192_AT Rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133A_2:214192_AT Rabaptin, RAB GTPase binding effector protein 1 hs
HUGENEFL:Y08613_AT Rabaptin, RAB GTPase binding effector protein 1 hs
U133_X3P:HS.172108.2.S1_3P_AT Rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133_PLUS_2:230274_S_AT Rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133B:230274_S_AT Rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133_PLUS_2:235786_AT Rabaptin, RAB GTPase binding effector protein 1 hs
HG-U133B:235786_AT Rabaptin, RAB GTPase binding effector protein 1 hs
HG-U95B:43565_AT Rabaptin, RAB GTPase binding effector protein 1 hs
HG-U95C:56835_AT Rabaptin, RAB GTPase binding effector protein 1 hs
HU35KSUBB:RC_T66877_AT Rabaptin, RAB GTPase binding effector protein 1 hs
U133_X3P:HS.19173.0.A1_3P_AT Rabaptin, RAB GTPase binding effector protein 1 hs
U133_X3P:HS.250535.0.S1_3P_AT Rabaptin, RAB GTPase binding effector protein 1 hs
MOE430A:1427448_AT rabaptin, RAB GTPase binding effector protein 1 mm
MOUSE430_2:1427448_AT rabaptin, RAB GTPase binding effector protein 1 mm
MOUSE430A_2:1427448_AT rabaptin, RAB GTPase binding effector protein 1 mm
MU11KSUBA:AA450406_S_AT rabaptin, RAB GTPase binding effector protein 1 mm
MU11KSUBA:D86066_S_AT rabaptin, RAB GTPase binding effector protein 1 mm
MG-U74AV2:101381_AT rabaptin, RAB GTPase binding effector protein 1 mm
MOE430A:1426023_A_AT rabaptin, RAB GTPase binding effector protein 1 mm
MOUSE430A_2:1426023_A_AT rabaptin, RAB GTPase binding effector protein 1 mm
MOUSE430_2:1426023_A_AT rabaptin, RAB GTPase binding effector protein 1 mm
MOE430A:1421305_X_AT rabaptin, RAB GTPase binding effector protein 1 mm
MOUSE430A_2:1421305_X_AT rabaptin, RAB GTPase binding effector protein 1 mm
MOUSE430_2:1421305_X_AT rabaptin, RAB GTPase binding effector protein 1 mm
MOE430A:1443856_AT rabaptin, RAB GTPase binding effector protein 1 mm
MOUSE430A_2:1443856_AT rabaptin, RAB GTPase binding effector protein 1 mm
MOUSE430_2:1443856_AT rabaptin, RAB GTPase binding effector protein 1 mm
MG-U74CV2:133377_AT Rabaptin, RAB GTPase binding effector protein 1, mRNA (cDNA clone IMAGE:3485175) mm
MU19KSUBA:TC21004_S_AT Rabaptin, RAB GTPase binding effector protein 1, mRNA (cDNA clone IMAGE:3485175) mm
MU19KSUBC:TC39530_AT Rabaptin, RAB GTPase binding effector protein 1, mRNA (cDNA clone IMAGE:3485175) mm
RAE230A:1367980_AT rabaptin 5 rn
RAT230_2:1367980_AT rabaptin 5 rn
RG-U34A:D85844_AT rabaptin 5 rn
RAE230A:1367981_AT rabaptin 5 rn
RAT230_2:1367981_AT rabaptin 5 rn
RAE230A:1374781_AT Rabaptin 5 rn
RAT230_2:1374781_AT Rabaptin 5 rn
RAE230B:1395843_AT Rabaptin 5 rn
RAT230_2:1395843_AT Rabaptin 5 rn
RG-U34B:RC_AI044933_AT Rabaptin 5 rn
RG-U34C:RC_AI112321_AT Rabaptin 5 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46638 Hypothetical protein F01F1.4 [Caenorhabditis elegans] ref|NP_498266.1| RABaptiN (rab effector) family member (rabn-5) [Caenorhabditis elegans] 0.0
blast CAE64380 Hypothetical protein CBG09067 [Caenorhabditis briggsae] 0.0
blast AAC47722 Native 66kDa protein [Angiostrongylus cantonensis] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR000306 EMBL-EBI Zn-finger, FYVE type 2.3E-26
Sequence
Target Sequence 
>C. ELEGANS:183659_AT
caggatgagatcaccgtcctgcgagctcagattctagaagaaagagcgcacagagaagat
caggaagtgacatttactgcagagatcagcagattgcagtcggaattaggaaagatcaac
actcgaatggttgttgcatcggaaacaattgcagatcaagattcgaatatcagacaaatt
agagatcttcaaacaactgtcggtgaacttgagacgcaggttcagcaggttcaaaatgag
agagccgctgttgaacagacggcacagaactacaagcaacggtgcacaagtcttcaacaa
gaactcgacacatctgaagttgtgcagagagattttgtgaaattatctcaaagcctccaa
attcaattggagaagattcgacagtcggaacaagaagtacgatggcaatgggatgatgat
gtagatcaatgctcaaattgtgatacatcgtttgctagagttaaagttaaacctcactgt
cttcattgtggtcggatattctgcatgaactgcctgaaagacaccgttccaagtggacca
aatcatcgaccagccaatgtgtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGATGAGATCACCGTCCTGCGAG 141 209 631 Antisense
CGTCCTGCGAGCTCAGATTCTAGAA 615 245 645 Antisense
GAGATCTTCAAACAACTGTCGGTGA 76 397 812 Antisense
AACTTGAGACGCAGGTTCAGCAGGT 289 139 836 Antisense
GAGCCGCTGTTGAACAGACGGCACA 63 387 872 Antisense
ACGGCACAGAACTACAAGCAACGGT 285 95 889 Antisense
AAGCAACGGTGCACAAGTCTTCAAC 276 151 904 Antisense
ACCTCACTGTCTTCATTGTGGTCGG 365 87 1101 Antisense
TTGTGGTCGGATATTCTGCATGAAC 643 707 1116 Antisense
GCATGAACTGCCTGAAAGACACCGT 628 309 1133 Antisense
AATCATCGACCAGCCAATGTGTGCA 49 171 1171 Antisense
Sequence Source Affymetrix Proprietary Database