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[183658_at]

Description C50F7.3 /REP_DB=WormBase Gene ID /WP=CE04241 /TR=Q18755 /GB=AAA83306.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 9.1
(-2.1)
A 		24.8
(3)
A 		6.4
(-3)
A 		23.1
(2.4)
A 		18
B 32.6
(0.1)
A 		50.1
(3)
A 		17.5
(-2.4)
A 		13.7
(-3)
A 		36
C 18.9
(-3)
A 		27.6
(-1.6)
A 		38
(0.1)
A 		56
(3)
A 		37
avr 20.2
(-3) 		34.2
(3) 		20.6
(-2.8) 		30.9
(1.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 11.1
(-3)
A 		23.9
(-1.8)
A 		14.1
(-2.7)
A 		10.6
(-3)
A 		76.5
(2.9)
A 		78
(3)
A 		67
B 8.9
(-3)
A 		54
(0)
A 		10
(-2.9)
A 		9.1
(-3)
A 		37.5
(-1.1)
A 		99
(3)
A 		90
C 3.4
(-3)
A 		40.1
(-0.6)
A 		19
(-2)
A 		78.9
(1.9)
A 		78.8
(1.9)
A 		95.4
(3)
A 		92
avr 7.8
(-3) 		39.3
(-0.7) 		14.4
(-2.5) 		32.9
(-1.2) 		64.3
(1.1) 		90.8
(3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.3
(-0.4)
A 		5.4
(3)
A 		1.7
(-3)
A 		3.4
(-0.2)
A 		4
B 10.4
(1.7)
A 		12.4
(3)
A 		4
(-2.3)
A 		2.9
(-3)
A 		10
C 6.2
(-3)
A 		7.9
(-1.5)
A 		13.2
(3)
A 		9.4
(-0.3)
A 		7
avr 6.6
(-0.5) 		8.6
(3) 		6.3
(-1.1) 		5.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 2
(-3)
A 		8.5
(-1.2)
A 		3.1
(-2.7)
A 		2.7
(-2.8)
A 		23.1
(3)
A 		19
(1.8)
A 		21
B 3.1
(-2.9)
A 		18
(-0.3)
A 		2.4
(-3)
A 		2.4
(-3)
A 		15.2
(-0.8)
A 		36.9
(3)
A 		35
C 1.3
(-3)
A 		12.2
(-0.9)
A 		4.8
(-2.3)
A 		15.9
(-0.1)
A 		25.5
(1.7)
A 		31.9
(3)
A 		31
avr 2.1
(-3) 		12.9
(-0.6) 		3.4
(-2.7) 		7
(-1.9) 		21.3
(1.2) 		29.3
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9621
Sequence Type Exemplar sequence
Representative Public ID C50F7.3 NCBI
Target Description C50F7.3 /REP_DB=WormBase Gene ID /WP=CE04241 /TR=Q18755 /GB=AAA83306.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068867 NCBI Caenorhabditis elegans C50F7.3 (C50F7.3) mRNA, complete cds. 11/11 None
SNAP00000024189 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7732355:7734160:1 11/11 None
GENEFINDER00000024195 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7731760:7734160:1 11/11 None
C50F7.3 ENSEMBL cdna:known chromosome:CEL140:IV:7732355:7734160:1 gene:C50F7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7732360-7734166(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50F7.3
Entrez Gene 183682 Entrez gene
SwissProt Q18755 EMBL-EBI
WormBase CE04241 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83306 Hypothetical protein C50F7.3 [Caenorhabditis elegans] ref|NP_501268.1| C50F7.3 [Caenorhabditis elegans] 1.0E-178
blast AAA83306 Hypothetical protein C50F7.3 [Caenorhabditis elegans] ref|NP_501268.1| C50F7.3 [Caenorhabditis elegans] 1.0E-175
blast AAA83306 Hypothetical protein C50F7.3 [Caenorhabditis elegans] ref|NP_501268.1| C50F7.3 [Caenorhabditis elegans] 1.0E-162
blast CAE70829 Hypothetical protein CBG17607 [Caenorhabditis briggsae] 1.0E-104
blast CAE70829 Hypothetical protein CBG17607 [Caenorhabditis briggsae] 1.0E-102
blast CAE70829 Hypothetical protein CBG17607 [Caenorhabditis briggsae] 9.0E-95
blast AAK29848 Hypothetical protein H06H21.9 [Caenorhabditis elegans] ref|NP_500654.1| H06H21.9 [Caenorhabditis elegans] 2.0E-22
Sequence
Target Sequence 
>C. ELEGANS:183658_AT
agtttttcatctcggtcttgacatcaaagaaatcgaaggaaagattgttgtctgtgacct
tgttgaaaactcacttggggacatgacatttagtgttggagaaacaattctcgatgtaga
tggcgaaaagcctttgtcctgtactggattcaatgaacgagtgagaaagtctctattgat
ccgtaactactgcttggttactgttgagattccatcgaccgatccacttaaaaatctgct
gagaaaccagatcacaaaaacagtgaaagaagctccacgtatccacaaactgccaccgga
tgcagcggcttatggagctgagggaattgcagtcttgagaaagtttggcggtggtgaaca
gttgaagccaattttgttagcagagccaattcccaaaagcaatgaatctgctcactctca
gctgaaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTTTCATCTCGGTCTTGACATC 489 63 417 Antisense
GATTGTTGTCTGTGACCTTGTTGAA 59 433 459 Antisense
CGAAAAGCCTTTGTCCTGTACTGGA 540 205 540 Antisense
GTCTCTATTGATCCGTAACTACTGC 140 469 585 Antisense
TAACTACTGCTTGGTTACTGTTGAG 437 637 600 Antisense
ACTGTTGAGATTCCATCGACCGATC 547 95 616 Antisense
GACCGATCCACTTAAAAATCTGCTG 546 381 633 Antisense
TGAAAGAAGCTCCACGTATCCACAA 678 571 680 Antisense
CCACCGGATGCAGCGGCTTATGGAG 534 273 709 Antisense
GTTAGCAGAGCCAATTCCCAAAAGC 361 445 792 Antisense
ATCTGCTCACTCTCAGCTGAAAATT 369 29 822 Antisense
Sequence Source Affymetrix Proprietary Database